Detailed information NTG0802558

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: P3U29_RS12490
• Genome accession: NZ_CP120073
• Coordinates: 2523330..2523842 (-)
• Length: 170 a.a.
• NCBI ID: WP_002484307.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus strain Dog122
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2518330..2528842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3U29_RS12430 (P3U29_12425)	-	2518626..2519240 (-)	615	WP_011303954.1	FMN-binding negative transcriptional regulator	-
P3U29_RS12435 (P3U29_12430)	-	2519281..2519679 (-)	399	WP_176720153.1	nuclear transport factor 2 family protein	-
P3U29_RS12440 (P3U29_12435)	-	2519721..2520065 (-)	345	WP_270912350.1	DUF4260 domain-containing protein	-
P3U29_RS12445 (P3U29_12440)	-	2520270..2520605 (+)	336	WP_156676072.1	DUF4870 domain-containing protein	-
P3U29_RS12450 (P3U29_12445)	-	2520660..2521073 (+)	414	WP_323709702.1	YxeA family protein	-
P3U29_RS12455 (P3U29_12450)	-	2521217..2521489 (-)	273	WP_323709703.1	hypothetical protein	-
P3U29_RS12460 (P3U29_12455)	-	2521609..2521731 (-)	123	WP_011303960.1	hypothetical protein	-
P3U29_RS12465 (P3U29_12460)	-	2521912..2522034 (+)	123	WP_011303961.1	hypothetical protein	-
P3U29_RS12470 (P3U29_12465)	-	2522308..2522514 (+)	207	WP_011303963.1	hypothetical protein	-
P3U29_RS12475 (P3U29_12470)	-	2522539..2522760 (+)	222	WP_011303964.1	hypothetical protein	-
P3U29_RS12480 (P3U29_12475)	-	2522775..2522915 (+)	141	WP_162835602.1	hypothetical protein	-
P3U29_RS12485 (P3U29_12480)	rpsR	2523038..2523280 (-)	243	WP_323709704.1	30S ribosomal protein S18	-
P3U29_RS12490 (P3U29_12485)	ssbA	2523330..2523842 (-)	513	WP_002484307.1	single-stranded DNA-binding protein	Machinery gene
P3U29_RS12495 (P3U29_12490)	rpsF	2523861..2524166 (-)	306	WP_011303966.1	30S ribosomal protein S6	-
P3U29_RS12500 (P3U29_12495)	-	2524588..2525394 (+)	807	WP_047505216.1	GH25 family lysozyme	-
P3U29_RS12505 (P3U29_12500)	ychF	2525557..2526654 (-)	1098	WP_047505213.1	redox-regulated ATPase YchF	-
P3U29_RS12510 (P3U29_12505)	-	2526654..2526869 (-)	216	WP_002484311.1	DUF951 domain-containing protein	-
P3U29_RS12515 (P3U29_12510)	-	2526898..2527776 (-)	879	WP_011303969.1	mechanosensitive ion channel family protein	-

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18948.48 Da
• Isoelectric Point: 4.9163

>NTDB_id=802558 P3U29_RS12490 WP_002484307.1 2523330..2523842(-) (ssbA) [Staphylococcus saprophyticus strain Dog122]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide

• Length: 513 bp

>NTDB_id=802558 P3U29_RS12490 WP_002484307.1 2523330..2523842(-) (ssbA) [Staphylococcus saprophyticus strain Dog122]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.647
ssb	Latilactobacillus sakei subsp. sakei 23K	57.225	100	0.582
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.091	64.706	0.382