Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   RDJ20_RS11365 Genome accession   NZ_CP133755
Coordinates   2365076..2365432 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain BJ86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2360076..2370432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS11340 (RDJ20_11340) fabF 2360288..2361532 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  RDJ20_RS11345 (RDJ20_11345) pabC 2361532..2362347 (+) 816 WP_033970430.1 aminodeoxychorismate lyase -
  RDJ20_RS11350 (RDJ20_11350) mltG 2362353..2363402 (+) 1050 WP_057389467.1 endolytic transglycosylase MltG -
  RDJ20_RS11355 (RDJ20_11355) tmk 2363431..2364063 (+) 633 WP_042164414.1 dTMP kinase -
  RDJ20_RS11360 (RDJ20_11360) - 2364056..2365042 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  RDJ20_RS11365 (RDJ20_11365) pilZ 2365076..2365432 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  RDJ20_RS11370 (RDJ20_11370) - 2365447..2366223 (+) 777 WP_033970427.1 TatD family hydrolase -
  RDJ20_RS11375 (RDJ20_11375) - 2366449..2367582 (-) 1134 WP_033975973.1 aminotransferase class V-fold PLP-dependent enzyme -
  RDJ20_RS11380 (RDJ20_11380) - 2367668..2368306 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  RDJ20_RS11385 (RDJ20_11385) - 2368473..2369369 (+) 897 WP_003091113.1 radical SAM protein -
  RDJ20_RS11390 (RDJ20_11390) - 2369434..2370066 (+) 633 WP_039027682.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=800889 RDJ20_RS11365 WP_003091119.1 2365076..2365432(+) (pilZ) [Pseudomonas aeruginosa strain BJ86]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=800889 RDJ20_RS11365 WP_003091119.1 2365076..2365432(+) (pilZ) [Pseudomonas aeruginosa strain BJ86]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449