Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P2C01_RS14080 Genome accession   NZ_CP119521
Coordinates   3024620..3025321 (+) Length   233 a.a.
NCBI ID   WP_275723153.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3019620..3030321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS14060 - 3020055..3020717 (+) 663 WP_004728474.1 hypothetical protein -
  P2C01_RS14065 - 3020773..3023082 (+) 2310 WP_275723152.1 Tex family protein -
  P2C01_RS14070 - 3023164..3023634 (-) 471 WP_004728470.1 hypothetical protein -
  P2C01_RS14075 bioH 3023763..3024533 (-) 771 WP_275724440.1 pimeloyl-ACP methyl ester esterase BioH -
  P2C01_RS14080 comF 3024620..3025321 (+) 702 WP_275723153.1 phosphoribosyltransferase family protein Machinery gene
  P2C01_RS14085 nfuA 3025422..3026009 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  P2C01_RS14090 nudE 3026155..3026703 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  P2C01_RS14095 cysQ 3026727..3027554 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  P2C01_RS14100 - 3027632..3028390 (-) 759 WP_055465865.1 type II secretion system protein N -
  P2C01_RS14105 - 3028387..3028896 (-) 510 WP_158141343.1 type II secretion system protein M -
  P2C01_RS14110 gspL 3028906..3030117 (-) 1212 WP_275723158.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26244.62 Da        Isoelectric Point: 8.9327

>NTDB_id=799470 P2C01_RS14080 WP_275723153.1 3024620..3025321(+) (comF) [Vibrio furnissii strain C1]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPH
ATVPQHGLDKAHRRRNLNRAFVLNHVPCLQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=799470 P2C01_RS14080 WP_275723153.1 3024620..3025321(+) (comF) [Vibrio furnissii strain C1]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTAGGCGACTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCGGCGCCGCTGCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGCGCATCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGTGCC
GTGCCTGCAACACGTAGCGATTGTCGACGATGTCGTCACCACTGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGTACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

48.536

100

0.498