Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   P2C01_RS13610 Genome accession   NZ_CP119521
Coordinates   2916161..2916751 (-) Length   196 a.a.
NCBI ID   WP_004728566.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911161..2921751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS13590 aroB 2912091..2913176 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  P2C01_RS13595 aroK 2913204..2913722 (-) 519 WP_004728569.1 shikimate kinase AroK -
  P2C01_RS13600 pilQ 2913910..2915634 (-) 1725 WP_275723097.1 type IV pilus secretin PilQ Machinery gene
  P2C01_RS13605 pilP 2915659..2916171 (-) 513 WP_275723099.1 pilus assembly protein PilP Machinery gene
  P2C01_RS13610 pilO 2916161..2916751 (-) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  P2C01_RS13615 pilN 2916744..2917334 (-) 591 WP_158165891.1 PilN domain-containing protein Machinery gene
  P2C01_RS13620 pilM 2917324..2918328 (-) 1005 WP_275723101.1 type IV pilus assembly protein PilM Machinery gene
  P2C01_RS13625 - 2918473..2920953 (+) 2481 WP_238773789.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22742.98 Da        Isoelectric Point: 4.8892

>NTDB_id=799465 P2C01_RS13610 WP_004728566.1 2916161..2916751(-) (pilO) [Vibrio furnissii strain C1]
MANVYDLELDEISEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAAHKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=799465 P2C01_RS13610 WP_004728566.1 2916161..2916751(-) (pilO) [Vibrio furnissii strain C1]
ATGGCTAACGTATACGATCTGGAACTGGACGAAATCAGCGAATGGCCGTTGGTGGCTCAATTGGTTGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGATACTGGTTTTATTTGCAGCCTAAACAAGACACATTGGCCGCACACAAGCAGCAAG
AGCAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGTCTGACCTTTACTCGCATCGACTGGGGAGAAAAGCAAAATCAGCAATTTCTCTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCGATCGCGCGTCTACCACGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGCCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGCGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

78.061

100

0.781
  pilO Vibrio campbellii strain DS40M4

70.526

96.939

0.684