Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PTW35_RS12920 | Genome accession | NZ_CP119423 |
| Coordinates | 2828957..2829202 (-) | Length | 81 a.a. |
| NCBI ID | WP_281027508.1 | Uniprot ID | - |
| Organism | Photobacterium sp. DA100 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2823957..2834202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTW35_RS12890 (PTW35_12890) | - | 2824015..2825229 (+) | 1215 | WP_281025330.1 | pyridoxal phosphate-dependent aminotransferase | - |
| PTW35_RS12895 (PTW35_12895) | yfbR | 2825494..2826078 (+) | 585 | WP_281025332.1 | 5'-deoxynucleotidase | - |
| PTW35_RS12900 (PTW35_12900) | - | 2826078..2827454 (+) | 1377 | WP_281025333.1 | anti-phage deoxyguanosine triphosphatase | - |
| PTW35_RS12905 (PTW35_12905) | - | 2827656..2828273 (-) | 618 | WP_281025334.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PTW35_RS12910 (PTW35_12910) | - | 2828257..2828427 (-) | 171 | WP_281027555.1 | hypothetical protein | - |
| PTW35_RS12915 (PTW35_12915) | rrtA | 2828356..2828844 (+) | 489 | WP_281027507.1 | rhombosortase | - |
| PTW35_RS12920 (PTW35_12920) | comEA | 2828957..2829202 (-) | 246 | WP_281027508.1 | ComEA family DNA-binding protein | Machinery gene |
| PTW35_RS12925 (PTW35_12925) | ppiD | 2829389..2831278 (-) | 1890 | WP_281025335.1 | peptidylprolyl isomerase | - |
| PTW35_RS12930 (PTW35_12930) | hupB | 2831538..2831810 (-) | 273 | WP_039467660.1 | nucleoid-associated protein HU-beta | - |
Sequence
Protein
Download Length: 81 a.a. Molecular weight: 8690.78 Da Isoelectric Point: 4.4488
>NTDB_id=799197 PTW35_RS12920 WP_281027508.1 2828957..2829202(-) (comEA) [Photobacterium sp. DA100]
MAAPVSATGDSHEGIEITVNINDANAEELDKLLVGIGPDKAASIIEYRQLNGPFESAEDLIKVKGIGTSTVEKNRERIKL
Q
MAAPVSATGDSHEGIEITVNINDANAEELDKLLVGIGPDKAASIIEYRQLNGPFESAEDLIKVKGIGTSTVEKNRERIKL
Q
Nucleotide
Download Length: 246 bp
>NTDB_id=799197 PTW35_RS12920 WP_281027508.1 2828957..2829202(-) (comEA) [Photobacterium sp. DA100]
ATGGCAGCCCCAGTCTCTGCCACCGGGGATAGCCACGAAGGCATCGAAATTACCGTCAACATCAATGATGCCAATGCCGA
AGAGCTGGATAAGTTACTGGTTGGTATCGGGCCGGATAAAGCCGCCAGTATCATTGAATACCGCCAGTTGAATGGGCCTT
TTGAGTCGGCAGAAGACTTGATCAAGGTGAAGGGGATTGGCACATCCACCGTCGAGAAAAATCGCGAGCGGATCAAGTTG
CAGTAA
ATGGCAGCCCCAGTCTCTGCCACCGGGGATAGCCACGAAGGCATCGAAATTACCGTCAACATCAATGATGCCAATGCCGA
AGAGCTGGATAAGTTACTGGTTGGTATCGGGCCGGATAAAGCCGCCAGTATCATTGAATACCGCCAGTTGAATGGGCCTT
TTGAGTCGGCAGAAGACTTGATCAAGGTGAAGGGGATTGGCACATCCACCGTCGAGAAAAATCGCGAGCGGATCAAGTTG
CAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.