Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   PYW40_RS00210 Genome accession   NZ_CP118979
Coordinates   42298..43929 (-) Length   543 a.a.
NCBI ID   WP_031870519.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain DSM 20263     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37298..48929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW40_RS12580 - 37901..38275 (+) 375 Protein_32 restriction endonuclease subunit S -
  PYW40_RS00175 - 38386..38607 (-) 222 WP_031870512.1 hypothetical protein -
  PYW40_RS00180 - 38622..39119 (-) 498 WP_031870513.1 DUF1643 domain-containing protein -
  PYW40_RS00185 - 39137..39448 (-) 312 WP_031870514.1 DUF960 family protein -
  PYW40_RS00190 - 39535..39885 (-) 351 WP_031870515.1 SAUGI family uracil-DNA glycosylase inhibitor -
  PYW40_RS00195 - 40415..41065 (-) 651 WP_031870516.1 hypothetical protein -
  PYW40_RS00200 - 41115..41624 (-) 510 WP_031870517.1 hypothetical protein -
  PYW40_RS00205 - 41659..42171 (-) 513 WP_031870518.1 hypothetical protein -
  PYW40_RS00210 ccrB 42298..43929 (-) 1632 WP_031870519.1 cassette chromosome recombinase CcrB Machinery gene
  PYW40_RS00215 ccrA 43926..45287 (-) 1362 WP_057504845.1 cassette chromosome recombinase CcrA Machinery gene
  PYW40_RS00220 cch1 45474..47243 (-) 1770 WP_031870521.1 cassette chromosome replicative helicase -
  PYW40_RS00225 ssb 47243..47539 (-) 297 WP_031870522.1 cassette chromosome ssDNA-binding protein -
  PYW40_RS00230 - 47731..48766 (-) 1036 Protein_44 hypothetical protein -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 62570.83 Da        Isoelectric Point: 9.6686

>NTDB_id=797097 PYW40_RS00210 WP_031870519.1 42298..43929(-) (ccrB) [Staphylococcus haemolyticus strain DSM 20263]
MTQLKKKRIGLYARVSTEIQTNGYSIQSQLNQLKEYCQFQGYEVVDEYTDRGISGKTTQRPELQRILKDANDGKLDCIMV
YKTNRLARNTSDLLTIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFSEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDKALWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPSPKCGAAMAASNTTNTLK
DGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNERSQIDVSSLNHDIAYKQSQC
EELKIKMHTLTKTIEDSPDLDSILKPTILNYQDELNQINNQIHQLEQDKQAEAPHYDADMIANILQTIFKDIDKLEKSQL
KSLYLTVIDRIDIRKDEHHKKQFYVTLKLNNEIIKQLFNNHPLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=797097 PYW40_RS00210 WP_031870519.1 42298..43929(-) (ccrB) [Staphylococcus haemolyticus strain DSM 20263]
ATGACACAACTCAAAAAGAAACGTATTGGATTATATGCCCGTGTATCGACTGAAATCCAGACGAACGGCTACAGCATTCA
AAGCCAGTTAAATCAACTTAAAGAGTATTGTCAATTTCAAGGATATGAAGTCGTTGATGAATATACCGATCGAGGTATAT
CGGGTAAAACCACGCAACGTCCTGAACTACAACGTATATTAAAAGATGCAAACGACGGTAAGTTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCTAGAAATACCTCAGATTTATTAACTATTGTCGAAGAATTATATAAGATTAATGTCGAATT
TTTTAGTCTAACTGAAAAAATAGAAATTGCCAGCTCAACTGGTAAATTAATGCTCCAAATCTTAGCTAGCTTCTCTGAAT
TTGAAAGAAATACAATTGTAGAAAATGTCTACAATGGCCAAAGACAACGTGCTATTGAAGGTTATTACCAAGGTAATTTA
CCTCTAGGCTATGATAAAGTGCCTGATAGTAAAAAAGAACTGATGATTAATCAACATGAAGCAAATATTGTTAAATATAT
TTTTGAGTCATACGCCAAAGGGCACGGTTATCGTAAAATTGCGAATGCATTAAATCACAAAGGTTACGTGACTAAGAAAG
GGAAACCGTTTAGTATTTCATCCATTACCTATATCATCTCAAACCCTTTTTATATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAGAGACGAAAAGGACTCAATGAAGAACCGATTATTGCGGATGGTAAGCATGCGCCTATTATTGA
TAAAGCCTTATGGGATAAAGTACAGTTTAAACGCCAAGAGAGTCGTAAGAAACCACAAGTTCATGGTAAAGGGACCAATC
TACTGACTGGGATTGTAAAATGTCCGAGTCCGAAATGTGGCGCAGCAATGGCCGCAAGTAATACAACTAATACTTTAAAA
GATGGCACTAAGAAACGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCTAAAGTATGTAGTGCTAATTC
TGTTAGAGCAGATGTATTGGAAAAATATGTTATGGATCAAATATTGGAGATTATCAAAAGTAAAAAGGTATTGAAACAAT
TGGTTGAAAAAGTAAATGAAAGAAGTCAAATAGACGTCTCTTCTTTGAATCATGATATTGCCTATAAACAGTCACAATGT
GAAGAACTAAAAATCAAAATGCATACACTAACGAAAACGATTGAAGACTCACCTGACTTAGATAGTATATTAAAACCAAC
AATACTTAACTATCAAGATGAATTGAATCAAATAAATAATCAAATACATCAACTAGAACAAGATAAACAAGCGGAAGCTC
CACATTATGATGCTGATATGATTGCCAACATACTACAAACAATATTCAAAGATATAGACAAATTAGAGAAATCTCAATTG
AAATCACTATATCTAACAGTCATCGATCGCATTGACATCAGAAAAGATGAGCATCATAAGAAGCAATTTTATGTTACGCT
TAAACTGAATAATGAAATTATCAAACAACTATTTAATAACCATCCACTCGACGAAGTGCTCCTTAGCACTTCGTCTTTAT
TTTTGCCACAAACACTGTACCTTACTATTTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(304-357)

Recombinase (Recombinase)

(179-280)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

73.346

100

0.735