Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RA106_RS01850 Genome accession   NZ_CP132900
Coordinates   340534..341196 (+) Length   220 a.a.
NCBI ID   WP_011680771.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CICC 20372     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335534..346196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS01825 (RA106_01830) - 335852..336562 (+) 711 WP_011680767.1 ABC transporter ATP-binding protein -
  RA106_RS01830 (RA106_01835) - 336698..337358 (+) 661 Protein_322 CBS and ACT domain-containing protein -
  RA106_RS01835 (RA106_01840) cysK 337525..338451 (-) 927 WP_011680768.1 cysteine synthase A -
  RA106_RS01840 (RA106_01845) - 338553..339179 (-) 627 WP_011680769.1 YigZ family protein -
  RA106_RS01845 (RA106_01850) comFA/cflA 339234..340553 (+) 1320 WP_024704193.1 DEAD/DEAH box helicase Machinery gene
  RA106_RS01850 (RA106_01855) comFC/cflB 340534..341196 (+) 663 WP_011680771.1 ComF family protein Machinery gene
  RA106_RS01855 (RA106_01860) hpf 341275..341823 (+) 549 WP_011680772.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26051.42 Da        Isoelectric Point: 8.9833

>NTDB_id=797044 RA106_RS01850 WP_011680771.1 340534..341196(+) (comFC/cflB) [Streptococcus thermophilus strain CICC 20372]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLEDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=797044 RA106_RS01850 WP_011680771.1 340534..341196(+) (comFC/cflB) [Streptococcus thermophilus strain CICC 20372]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGAGGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445