Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q8X46_RS14845 Genome accession   NZ_CP132063
Coordinates   2997428..2998057 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain QML220601     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2992428..3003057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X46_RS14830 (Q8X46_14830) helD 2992670..2994724 (-) 2055 WP_000420533.1 DNA helicase IV -
  Q8X46_RS14835 (Q8X46_14835) yccF 2994847..2995293 (+) 447 WP_001261231.1 YccF domain-containing protein -
  Q8X46_RS14840 (Q8X46_14840) yccS 2995303..2997465 (+) 2163 WP_000875020.1 YccS family putative transporter -
  Q8X46_RS14845 (Q8X46_14845) sxy/tfoX 2997428..2998057 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Q8X46_RS14850 (Q8X46_14850) sulA 2998276..2998785 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  Q8X46_RS14855 (Q8X46_14855) ompA 2999142..3000182 (+) 1041 WP_000750416.1 porin OmpA -
  Q8X46_RS14860 (Q8X46_14860) matP 3000258..3000710 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  Q8X46_RS14865 (Q8X46_14865) ycbZ 3000896..3002656 (+) 1761 WP_306169440.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=795334 Q8X46_RS14845 WP_000839153.1 2997428..2998057(-) (sxy/tfoX) [Escherichia coli strain QML220601]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=795334 Q8X46_RS14845 WP_000839153.1 2997428..2998057(-) (sxy/tfoX) [Escherichia coli strain QML220601]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1