Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX49_RS11105 Genome accession   NZ_CP132038
Coordinates   2211643..2212416 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 1.6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206643..2217416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX49_RS11070 - 2206896..2207666 (-) 771 WP_000473705.1 isoprenyl transferase -
  QFX49_RS11075 frr 2208039..2208593 (-) 555 WP_001280006.1 ribosome recycling factor -
  QFX49_RS11080 pyrH 2208612..2209334 (-) 723 WP_000057330.1 UMP kinase -
  QFX49_RS11085 tsf 2209471..2210352 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QFX49_RS11090 - 2210387..2210500 (-) 114 WP_001789890.1 hypothetical protein -
  QFX49_RS11095 rpsB 2210534..2211301 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX49_RS11100 - 2211500..2211592 (-) 93 WP_001790530.1 hypothetical protein -
  QFX49_RS11105 codY 2211643..2212416 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX49_RS11110 hslU 2212441..2213844 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX49_RS11115 hslV 2213910..2214455 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX49_RS11120 xerC 2214452..2215348 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX49_RS11125 trmFO 2215765..2217072 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=795181 QFX49_RS11105 WP_000055337.1 2211643..2212416(-) (codY) [Staphylococcus aureus strain 1.6]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=795181 QFX49_RS11105 WP_000055337.1 2211643..2212416(-) (codY) [Staphylococcus aureus strain 1.6]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428