Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PWW25_RS15750 Genome accession   NZ_CP118584
Coordinates   3348905..3349912 (-) Length   335 a.a.
NCBI ID   WP_005450580.1    Uniprot ID   K5TI37
Organism   Vibrio harveyi strain fish5     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3343905..3354912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW25_RS15730 - 3344470..3345387 (-) 918 WP_005450584.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PWW25_RS15735 hslU 3345696..3347027 (-) 1332 WP_009698879.1 HslU--HslV peptidase ATPase subunit -
  PWW25_RS15740 hslV 3347057..3347608 (-) 552 WP_009698878.1 ATP-dependent protease subunit HslV -
  PWW25_RS15745 - 3348194..3348739 (-) 546 WP_005450581.1 SPOR domain-containing protein -
  PWW25_RS15750 cytR 3348905..3349912 (-) 1008 WP_005450580.1 DNA-binding transcriptional regulator CytR Regulator
  PWW25_RS15755 priA 3350119..3352320 (-) 2202 WP_274876587.1 primosomal protein N' -
  PWW25_RS15760 rpmE 3352617..3352838 (+) 222 WP_005450576.1 50S ribosomal protein L31 -
  PWW25_RS15765 rpsJ 3353296..3353607 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  PWW25_RS15770 rplC 3353622..3354251 (+) 630 WP_005435072.1 50S ribosomal protein L3 -
  PWW25_RS15775 rplD 3354269..3354871 (+) 603 WP_005435074.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36918.48 Da        Isoelectric Point: 5.9796

>NTDB_id=793679 PWW25_RS15750 WP_005450580.1 3348905..3349912(-) (cytR) [Vibrio harveyi strain fish5]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=793679 PWW25_RS15750 WP_005450580.1 3348905..3349912(-) (cytR) [Vibrio harveyi strain fish5]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAGCTTGGTCACAAGCGTATTGCTCAGATCTCTGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAATTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGCGACACCATGGCGATTGGTGCTATCCAAGAAGCGAAACGTCTTGGCCTGCGTATTCCGCAGGATTT
ATCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGACGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K5TI37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

96.386

99.104

0.955
  cytR Vibrio cholerae C6706

90.663

99.104

0.899