Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EsVE80_RS04280 Genome accession   NZ_AP022822
Coordinates   913125..914801 (+) Length   558 a.a.
NCBI ID   WP_173102597.1    Uniprot ID   A0A679IND5
Organism   Enterococcus saigonensis strain VE80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908125..919801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EsVE80_RS04250 (EsVE80_08210) - 908180..909037 (+) 858 WP_173102591.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  EsVE80_RS04255 (EsVE80_08220) xseA 909038..910390 (+) 1353 WP_173102592.1 exodeoxyribonuclease VII large subunit -
  EsVE80_RS04260 (EsVE80_08230) - 910440..910661 (+) 222 WP_173102593.1 exodeoxyribonuclease VII small subunit -
  EsVE80_RS04265 (EsVE80_08240) - 910658..911557 (+) 900 WP_173102594.1 polyprenyl synthetase family protein -
  EsVE80_RS04270 (EsVE80_08250) - 911554..912369 (+) 816 WP_173102595.1 TlyA family RNA methyltransferase -
  EsVE80_RS04275 (EsVE80_08260) argR 912656..913105 (+) 450 WP_173102596.1 arginine repressor -
  EsVE80_RS04280 (EsVE80_08270) recN 913125..914801 (+) 1677 WP_173102597.1 DNA repair protein RecN Machinery gene
  EsVE80_RS04285 - 914872..914988 (-) 117 WP_016172522.1 DUF4044 domain-containing protein -
  EsVE80_RS04290 (EsVE80_08280) - 915067..916020 (-) 954 WP_173102598.1 magnesium transporter CorA family protein -
  EsVE80_RS04295 (EsVE80_08290) - 916194..916562 (+) 369 WP_173102599.1 DUF3397 domain-containing protein -
  EsVE80_RS04300 (EsVE80_08300) mraZ 916725..917156 (+) 432 WP_173102600.1 division/cell wall cluster transcriptional repressor MraZ -
  EsVE80_RS04305 (EsVE80_08310) rsmH 917171..918124 (+) 954 WP_173102601.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EsVE80_RS04310 (EsVE80_08320) ftsL 918138..918554 (+) 417 WP_173102602.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63165.63 Da        Isoelectric Point: 4.8343

>NTDB_id=79242 EsVE80_RS04280 WP_173102597.1 913125..914801(+) (recN) [Enterococcus saigonensis strain VE80]
MLVELAIKNFAIISSLRLQFHQGMTALTGETGAGKSIIIDAMGLLCGSRGSSDYIREGSNKCSLEGLFELPKSSQLNELL
HELGIETEDELLIVQRDISQSGKNICRVNGRTLTLANLRRIGAFLVDIQGQNEHQELLQPDRHLHLLDQFGGQKFHELLE
RYQQAYEKFQHLNKQMRKIQVNEQSYVQRVDMLHFQQDEIASANLLPNEEEELVEEREKLGNYQKIVDSLAKSYALLTND
EENSLDGIGAALTNMQDIAHLDNEYETISENLQSAFYLLQDAAGDISRQLDSLSFDEGRLEEVNQRLELIRQLKRKYGES
IPEILAYYDEIKKELAESAFSEGQLEQLAKEVHIQEQVVWHFAEELHQERKRIARKLAKAIVTELKELYMEYSQFEVRFN
NGKKILHENGFDEVEFYLTTNPGEPLKPLVKVASGGELSRMLLALKTIFSQSQGITSIVFDEVDTGVSGRVAQAIAEKIA
KIAENSQVLCITHLPQVAAIADYQYYIKKEVSQGRTQTIVSELAPHLRINEIARMLAGAEVTDLTLEHAKELLAMAGH

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=79242 EsVE80_RS04280 WP_173102597.1 913125..914801(+) (recN) [Enterococcus saigonensis strain VE80]
ATGTTAGTAGAATTAGCAATTAAAAATTTTGCAATTATTTCCAGTCTACGTTTGCAATTTCATCAAGGTATGACAGCATT
AACTGGAGAAACGGGTGCAGGAAAATCAATCATTATTGATGCAATGGGCCTTTTATGTGGGAGCCGGGGTTCTAGTGATT
ATATTCGTGAAGGTAGTAATAAATGTAGCCTTGAAGGTTTATTCGAATTGCCTAAAAGTAGTCAGTTAAACGAGTTATTG
CACGAGCTAGGCATTGAAACAGAGGACGAATTACTAATTGTACAACGGGATATTAGTCAAAGTGGTAAAAATATTTGTCG
TGTGAACGGCCGCACGTTAACCTTAGCAAATTTGCGACGGATTGGAGCTTTCTTAGTTGATATTCAAGGGCAAAATGAAC
ATCAAGAACTGCTGCAACCAGATCGTCATTTGCATTTATTAGATCAATTTGGTGGACAAAAATTTCATGAATTATTAGAG
CGCTATCAACAAGCTTATGAAAAATTTCAACATTTAAATAAGCAAATGCGTAAAATTCAAGTTAATGAACAGTCATATGT
ACAAAGAGTAGATATGCTGCATTTTCAGCAAGATGAAATTGCAAGTGCCAATTTGTTACCAAATGAAGAGGAAGAACTAG
TAGAAGAGCGAGAAAAATTAGGGAATTATCAAAAAATTGTTGATAGTCTGGCTAAAAGTTATGCGCTTTTAACTAACGAT
GAAGAAAATAGCTTAGATGGAATTGGCGCTGCCTTAACGAATATGCAAGATATTGCACATTTGGATAATGAATATGAAAC
AATTAGTGAGAACTTACAATCTGCTTTTTATTTATTACAAGATGCGGCTGGTGATATTTCCCGACAATTAGATAGTTTAT
CTTTTGATGAAGGGCGCTTAGAAGAGGTGAATCAACGGTTAGAATTAATTCGTCAATTAAAACGAAAATATGGTGAGAGT
ATCCCAGAAATTTTAGCGTATTATGATGAAATAAAAAAAGAACTTGCTGAATCTGCTTTTTCTGAAGGTCAGTTAGAGCA
ATTGGCAAAAGAAGTTCATATACAAGAACAAGTAGTGTGGCATTTCGCAGAAGAGTTGCATCAAGAACGAAAAAGGATTG
CCCGCAAACTCGCAAAAGCTATTGTCACCGAGTTAAAAGAACTCTATATGGAGTATAGTCAGTTTGAAGTCCGTTTTAAT
AATGGCAAAAAAATACTTCATGAAAATGGGTTTGATGAAGTGGAATTCTATCTAACTACCAATCCAGGAGAACCCTTAAA
GCCCTTAGTTAAGGTTGCTTCAGGTGGTGAATTGTCCCGGATGTTATTAGCATTAAAAACAATTTTTTCTCAAAGTCAAG
GCATTACGAGTATTGTTTTTGATGAAGTCGATACAGGTGTGAGCGGTAGAGTCGCACAAGCAATTGCTGAAAAAATTGCT
AAAATTGCGGAAAATTCTCAAGTTTTGTGTATTACCCACTTACCACAAGTTGCAGCAATTGCGGATTATCAGTATTACAT
TAAAAAGGAAGTCAGCCAAGGACGAACGCAAACAATCGTTTCTGAATTAGCCCCGCATTTACGCATAAACGAAATTGCAC
GTATGTTAGCTGGAGCTGAGGTGACTGATTTAACGCTGGAACATGCCAAGGAGCTTTTGGCTATGGCTGGTCATTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679IND5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.421

100

0.495

Multiple sequence alignment