Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KATP_RS05090 Genome accession   NZ_AP022665
Coordinates   1071570..1072628 (+) Length   352 a.a.
NCBI ID   WP_035892538.1    Uniprot ID   A0A378GIS1
Organism   Kluyvera ascorbata strain TP1631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066570..1077628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KATP_RS05065 (KATP_10020) mltB 1067131..1068201 (+) 1071 WP_035892543.1 lytic murein transglycosylase B -
  KATP_RS05070 (KATP_10030) - 1068396..1069106 (+) 711 WP_167540403.1 metal ABC transporter ATP-binding protein -
  KATP_RS05075 (KATP_10040) - 1069103..1069966 (+) 864 WP_035892541.1 metal ABC transporter permease -
  KATP_RS05080 (KATP_10050) - 1069975..1070853 (+) 879 WP_035892540.1 metal ABC transporter substrate-binding protein -
  KATP_RS05085 (KATP_10060) pncC 1070992..1071489 (+) 498 WP_035892539.1 nicotinamide-nucleotide amidase -
  KATP_RS05090 (KATP_10070) recA 1071570..1072628 (+) 1059 WP_035892538.1 recombinase RecA Machinery gene
  KATP_RS05095 (KATP_10080) recX 1072698..1073198 (+) 501 WP_035892537.1 recombination regulator RecX -
  KATP_RS05100 (KATP_10090) alaS 1073449..1076076 (+) 2628 WP_035892535.1 alanine--tRNA ligase -
  KATP_RS05105 (KATP_10100) csrA 1076317..1076502 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37883.25 Da        Isoelectric Point: 4.8017

>NTDB_id=79108 KATP_RS05090 WP_035892538.1 1071570..1072628(+) (recA) [Kluyvera ascorbata strain TP1631]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSTPDFAVDNNSVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=79108 KATP_RS05090 WP_035892538.1 1071570..1072628(+) (recA) [Kluyvera ascorbata strain TP1631]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCTGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCCATGGACGTGGAAACTATCTCTACCGGTTCGCTTTCGCTGGATATCGCGCTGGGCG
CTGGCGGCCTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCAGAATCCTCCGGTAAAACAACGCTGACGCTGCAGGTT
ATCGCTGCCGCGCAGCGTGAAGGCAAAACCTGTGCGTTTATCGACGCTGAACACGCGCTGGACCCAGTCTATGCTCGCAA
GCTGGGCGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGTTCTGGTGCGGTAGACGTTATCGTTGTCGACTCCGTTGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCAGAAACCACCACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCCGTACGTCTTGATATCCGTCGTATCGGCGCTGTGAAAGAGGGCGACAACGTTGTCGGC
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATTGCAGCTCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTTCGGTGAGCTGGTCGACCTTGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAAATTGGTCAGGGTAAAGCGAACGCTATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAAATT
GAGAAGAAGGTGCGTGAGCTGCTGCTCAACAACCAGGACTCTACGCCGGACTTCGCCGTTGATAACAACAGCGTTGAAGA
AACCAACGAAGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378GIS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

74.184

95.739

0.71
  recA Acinetobacter baumannii D1279779

75.229

92.898

0.699
  recA Acinetobacter baylyi ADP1

74.695

93.182

0.696
  recA Glaesserella parasuis strain SC1401

69.231

99.716

0.69
  recA Ralstonia pseudosolanacearum GMI1000

68.563

94.886

0.651
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

60.294

96.591

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

94.318

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment