Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PT966_RS17405 Genome accession   NZ_CP117945
Coordinates   3499973..3500662 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain ZY1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3494973..3505662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS17370 (PT966_17370) fliW 3495064..3495495 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  PT966_RS17375 (PT966_17375) - 3495525..3496094 (-) 570 WP_003151397.1 DUF6470 family protein -
  PT966_RS17380 (PT966_17380) flgL 3496185..3497102 (-) 918 WP_060657505.1 flagellar hook-associated protein FlgL -
  PT966_RS17385 (PT966_17385) flgK 3497114..3498631 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  PT966_RS17390 (PT966_17390) - 3498647..3499129 (-) 483 WP_003151394.1 flagellar protein FlgN -
  PT966_RS17395 (PT966_17395) flgM 3499144..3499410 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PT966_RS17400 (PT966_17400) - 3499480..3499899 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  PT966_RS17405 (PT966_17405) comFC 3499973..3500662 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  PT966_RS17410 (PT966_17410) - 3500668..3500952 (-) 285 WP_003151389.1 competence protein ComFB -
  PT966_RS17415 (PT966_17415) comFA 3501010..3502395 (-) 1386 WP_044052858.1 DEAD/DEAH box helicase Machinery gene
  PT966_RS17420 (PT966_17420) - 3502503..3503351 (-) 849 WP_044052857.1 DegV family protein -
  PT966_RS17425 (PT966_17425) degU 3503449..3504138 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PT966_RS17430 (PT966_17430) degS 3504215..3505378 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=788447 PT966_RS17405 WP_196616643.1 3499973..3500662(-) (comFC) [Bacillus velezensis strain ZY1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=788447 PT966_RS17405 WP_196616643.1 3499973..3500662(-) (comFC) [Bacillus velezensis strain ZY1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAGGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603