Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6386_RS07875 Genome accession   NZ_CP130891
Coordinates   1499239..1499850 (-) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494239..1504850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS07845 (Q6386_07845) yaaA 1494706..1495485 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  Q6386_RS07850 (Q6386_07850) dapC 1495796..1496983 (-) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6386_RS07855 (Q6386_07855) dut 1497061..1497513 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6386_RS07860 (Q6386_07860) - 1497679..1498386 (+) 708 Protein_1506 AzlC family ABC transporter permease -
  Q6386_RS07865 (Q6386_07865) - 1498383..1498691 (+) 309 WP_010951048.1 AzlD family protein -
  Q6386_RS07870 (Q6386_07870) pilL 1498761..1499237 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6386_RS07875 (Q6386_07875) pilK 1499239..1499850 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6386_RS07880 (Q6386_07880) pilJ 1499829..1500809 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6386_RS07885 (Q6386_07885) pilV 1500806..1501417 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  Q6386_RS07890 (Q6386_07890) pilH 1501449..1502114 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6386_RS07895 (Q6386_07895) dnaB 1502269..1503675 (-) 1407 WP_047917169.1 replicative DNA helicase -
  Q6386_RS07900 (Q6386_07900) - 1503839..1504420 (+) 582 WP_047923823.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=788090 Q6386_RS07875 WP_003687918.1 1499239..1499850(-) (pilK) [Neisseria gonorrhoeae strain NJ208430]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=788090 Q6386_RS07875 WP_003687918.1 1499239..1499850(-) (pilK) [Neisseria gonorrhoeae strain NJ208430]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1