Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   Q6386_RS07870 Genome accession   NZ_CP130891
Coordinates   1498761..1499237 (-) Length   158 a.a.
NCBI ID   WP_203004379.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493761..1504237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS07845 (Q6386_07845) yaaA 1494706..1495485 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  Q6386_RS07850 (Q6386_07850) dapC 1495796..1496983 (-) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6386_RS07855 (Q6386_07855) dut 1497061..1497513 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6386_RS07860 (Q6386_07860) - 1497679..1498386 (+) 708 Protein_1506 AzlC family ABC transporter permease -
  Q6386_RS07865 (Q6386_07865) - 1498383..1498691 (+) 309 WP_010951048.1 AzlD family protein -
  Q6386_RS07870 (Q6386_07870) pilL 1498761..1499237 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6386_RS07875 (Q6386_07875) pilK 1499239..1499850 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6386_RS07880 (Q6386_07880) pilJ 1499829..1500809 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6386_RS07885 (Q6386_07885) pilV 1500806..1501417 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  Q6386_RS07890 (Q6386_07890) pilH 1501449..1502114 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6386_RS07895 (Q6386_07895) dnaB 1502269..1503675 (-) 1407 WP_047917169.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.47 Da        Isoelectric Point: 9.4067

>NTDB_id=788089 Q6386_RS07870 WP_203004379.1 1498761..1499237(-) (pilL) [Neisseria gonorrhoeae strain NJ208430]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=788089 Q6386_RS07870 WP_203004379.1 1498761..1499237(-) (pilL) [Neisseria gonorrhoeae strain NJ208430]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATG
CCACTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

99.367

100

0.994
  pilX Neisseria meningitidis 8013

85.443

100

0.854