Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHB58_RS16295 Genome accession   NZ_CP130716
Coordinates   3662489..3664705 (-) Length   738 a.a.
NCBI ID   WP_371652798.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3657489..3669705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB58_RS16275 (OHB58_16225) - 3657560..3657763 (+) 204 WP_101388375.1 AlpA family transcriptional regulator -
  OHB58_RS16280 (OHB58_16230) - 3657894..3658205 (+) 312 WP_371652796.1 heavy-metal-associated domain-containing protein -
  OHB58_RS16285 (OHB58_16235) - 3658332..3660608 (+) 2277 WP_371656956.1 heavy metal translocating P-type ATPase -
  OHB58_RS16290 (OHB58_16240) - 3661011..3662309 (-) 1299 WP_371652797.1 citrate synthase -
  OHB58_RS16295 (OHB58_16245) recD/recD2/recDB 3662489..3664705 (-) 2217 WP_371652798.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHB58_RS16300 (OHB58_16250) - 3665006..3665431 (+) 426 WP_371652799.1 DUF937 domain-containing protein -
  OHB58_RS16305 (OHB58_16255) - 3665532..3666338 (-) 807 WP_371652800.1 SDR family NAD(P)-dependent oxidoreductase -
  OHB58_RS16310 (OHB58_16260) - 3666479..3667552 (-) 1074 WP_371652801.1 LacI family DNA-binding transcriptional regulator -
  OHB58_RS16315 (OHB58_16265) - 3667745..3668920 (+) 1176 WP_371652802.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79507.99 Da        Isoelectric Point: 6.9789

>NTDB_id=787085 OHB58_RS16295 WP_371652798.1 3662489..3664705(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00150]
MSNLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDVIEQQPGRLVEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQL
IADSVKLLQVDTGLVIDCLAELVAEEGVVREPVPGPVGGAERVNAVYLVPFHRAELSLAAQVVRLLRTGEDRMPGFQDVD
WDRALSWLAARTGAELAPEQQDAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELTGA
DASTVHRLLELRPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLMVGDVDQLPSVGAGEVLRDLLAE
GGPVPRVRLTRIFRQAQQSGVVTNAHRINSGVPPLTQGLSDFFHFVEEETEDAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGNLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTALDLDEQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTVS
AGRRFTALAHRLSGGGLV

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=787085 OHB58_RS16295 WP_371652798.1 3662489..3664705(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00150]
ATGTCCAATCTCGCGGTGCTCGAAGGGGTCCTGGAGCGGATCACTTACGCCAACGAGGAGAACGGCTACACGGTCGCCCG
GGTCGACACCGGGCGCGGCGGTGGCGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCGCTGC
GGATGGAGGGCCGCTGGGGCTCGCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACCGTGCTGCCCGCC
ACCATCCAGGGCATCCGGCGCTACCTCGGCTCGGGCCTGATCAAGGGCATCGGCCCCCGCATCGCCGACCGCATCGTGGA
GCACTTCGGCACGGACACGCTCGACGTCATCGAGCAGCAGCCGGGGCGCCTCGTGGAAGTGCCCGGCCTCGGCCCCAAGC
GCACCAAGCTCATCGGAGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAAGTGATGGTCTTCCTCCAGGGGGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTGGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AACGCGTCAAGGCCGGCTTGCAGTACGCACTGTCCCAGTCCACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAGCTC
ATCGCGGACTCGGTGAAGCTCCTCCAGGTCGACACGGGCCTGGTGATCGACTGCCTGGCCGAGCTGGTCGCCGAGGAAGG
TGTCGTCCGCGAGCCGGTCCCGGGCCCGGTGGGCGGTGCCGAGCGGGTCAACGCCGTCTATCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTCGTCCGGCTGCTGCGTACCGGCGAGGACCGGATGCCGGGCTTCCAGGACGTGGAC
TGGGACCGGGCCCTGTCCTGGCTCGCCGCGCGCACCGGCGCCGAGCTCGCCCCCGAGCAGCAGGACGCCGTGCGGCTCGC
CCTGACCAGCAAGGTCGCGGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACCGTGCGCTCCGTCGTCGAGCTCG
CCCGGGCCAAGAAGGCCAAGGTGGTGCTCGCCGCGCCCACCGGCCGCGCCGCCAAGCGGCTCGCCGAGCTCACCGGCGCC
GACGCGTCGACGGTGCACCGCCTGCTGGAGCTGCGACCGGGCGGCGACGCGGCGTACGACAAGGACCGCCCGCTCGACGC
CGATCTGGTGGTGGTCGACGAGGCCTCGATGCTCGATCTGCTGCTCGCCAACAAGCTGGTGAAGGCGGTCGCCCCGGGCG
CGCACCTGCTGATGGTCGGCGACGTGGACCAACTGCCCTCGGTCGGCGCCGGCGAGGTGCTGCGCGATCTGCTCGCCGAG
GGCGGGCCGGTGCCGAGGGTGCGCCTCACCAGGATCTTCCGCCAGGCTCAGCAGTCCGGCGTGGTCACCAACGCCCATCG
CATCAACTCCGGCGTCCCGCCGCTCACCCAGGGCCTCAGCGACTTCTTCCACTTCGTGGAGGAGGAGACCGAGGACGCCG
GGCGGCTCACGGTGGACGTGGCGGCGCGGCGCATCCCCGCGAAGTTCGGCCTCGACCCCCGGCGGGACGTCCAGGTGCTC
GCCCCGATGCACCGAGGCCCGGCCGGCGCGGGCAACCTCAACGGCCTCCTCCAGCAGGCCATCACCCCGGCCCGCCCCGA
TCTGCCGGAGAAGCGGTTCGGCGGCCGGGTGTTCCGGGTGGGCGACAAGGTCACGCAGATCCGGAACAATTACGAGAAGG
GCAAGAACGGTGTCTTCAACGGCACCGTCGGCGTGGTGACCGCGCTCGACCTGGACGAACAGCGCCTGACGGTGCTGACG
GACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTGGACGAGCTGGCCCATGCGTACGCGGTGACGATCCACCGCTC
GCAGGGCAGTGAATACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCCTGGATGATGCTTCAGCGGAACCTGCTCTACA
CGGCGGTCACCCGCGCCAGAAAACTCGTCGTACTGGTGGGGTCCCGCAAGGCGATCGGCCAGGCAGTGCGTACGGTTTCC
GCAGGCAGACGCTTTACCGCACTCGCTCACCGGCTGTCAGGGGGCGGTTTGGTGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix domain (HHH_5)

(94-138)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.072

100

0.365