Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PL321_RS03490 Genome accession   NZ_CP117677
Coordinates   494166..494744 (-) Length   192 a.a.
NCBI ID   WP_273963475.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 489166..499744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS03475 (PL321_03480) - 490027..491354 (-) 1328 Protein_700 FAD-dependent oxidoreductase -
  PL321_RS03480 (PL321_03485) - 491560..492825 (-) 1266 Protein_701 APC family permease -
  PL321_RS03485 (PL321_03490) - 492858..493586 (-) 729 WP_273963473.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  PL321_RS03490 (PL321_03495) pilR 494166..494744 (-) 579 WP_273963475.1 sigma 54-interacting transcriptional regulator Regulator
  PL321_RS03495 (PL321_03500) - 494953..495729 (-) 777 WP_273963476.1 PAS domain-containing protein -
  PL321_RS03500 (PL321_03505) - 496078..496248 (+) 171 WP_273963477.1 hypothetical protein -
  PL321_RS03505 (PL321_03510) - 496272..496814 (+) 543 WP_273963478.1 alanyl-tRNA editing protein -
  PL321_RS03510 (PL321_03515) - 496874..497098 (+) 225 WP_273963479.1 hypothetical protein -
  PL321_RS03515 (PL321_03520) hcp 497290..498929 (-) 1640 Protein_708 hydroxylamine reductase -
  PL321_RS03520 (PL321_03525) - 499124..499417 (-) 294 WP_273963480.1 DUF2752 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21647.30 Da        Isoelectric Point: 7.8045

>NTDB_id=786893 PL321_RS03490 WP_273963475.1 494166..494744(-) (pilR) [Caloramator sp. mosi_1]
MIITNSPKMKECINIAKKIAKSDYTVLINGESGTGKEMIAQSIHNYSNRSIYPFVAVNCAALPENLLESELFGYEKGAFT
GALKEGKIGLFEIANNGTIFLDEIGDMPLKLQTRLLRVLQEKQIMRVGSDNIINVNVRVIAATNKDLKKLVDEGLFREDL
YYRINVLPISLPPLRERKEDIMPLLESFLKEK

Nucleotide


Download         Length: 579 bp        

>NTDB_id=786893 PL321_RS03490 WP_273963475.1 494166..494744(-) (pilR) [Caloramator sp. mosi_1]
ATGATTATAACAAATTCTCCTAAGATGAAGGAATGCATTAATATAGCAAAGAAAATAGCTAAATCAGATTATACAGTATT
AATTAATGGAGAAAGTGGTACTGGTAAAGAGATGATTGCTCAATCTATACACAATTATAGTAATCGTTCTATATATCCTT
TTGTTGCTGTAAATTGTGCTGCTTTGCCTGAAAATTTATTAGAAAGTGAGCTTTTCGGATATGAAAAAGGTGCATTTACA
GGTGCATTAAAGGAAGGCAAAATTGGTTTATTTGAGATTGCCAATAATGGAACAATTTTTTTAGATGAAATAGGTGATAT
GCCACTAAAATTACAAACAAGGCTTTTAAGAGTACTTCAGGAAAAACAAATAATGAGAGTTGGTTCAGATAACATAATTA
ATGTCAATGTTAGAGTTATTGCAGCAACTAATAAAGATTTAAAGAAATTAGTAGATGAAGGTTTATTTAGAGAGGATTTA
TATTATAGAATAAATGTATTACCAATTTCTTTACCACCACTTAGGGAAAGAAAAGAAGATATAATGCCTCTTTTAGAAAG
TTTTTTGAAAGAAAAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(2-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.265

98.438

0.495
  pilR Acinetobacter baumannii strain A118

53.143

91.146

0.484
  luxO Vibrio cholerae strain A1552

49.468

97.917

0.484