Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q4S51_RS15045 Genome accession   NZ_CP130667
Coordinates   3088853..3089482 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain SM107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083853..3094482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4S51_RS15030 (Q4S51_15030) helD 3084095..3086149 (-) 2055 WP_304407811.1 DNA helicase IV -
  Q4S51_RS15035 (Q4S51_15035) yccF 3086272..3086718 (+) 447 WP_001261235.1 YccF domain-containing protein -
  Q4S51_RS15040 (Q4S51_15040) yccS 3086728..3088890 (+) 2163 WP_000323868.1 YccS family putative transporter -
  Q4S51_RS15045 (Q4S51_15045) sxy/tfoX 3088853..3089482 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Q4S51_RS15050 (Q4S51_15050) sulA 3089701..3090210 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  Q4S51_RS15055 (Q4S51_15055) ompA 3090567..3091622 (+) 1056 WP_000750414.1 porin OmpA -
  Q4S51_RS15060 (Q4S51_15060) matP 3091700..3092152 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  Q4S51_RS15065 (Q4S51_15065) ycbZ 3092338..3094098 (+) 1761 WP_021556661.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=786475 Q4S51_RS15045 WP_000839153.1 3088853..3089482(-) (sxy/tfoX) [Escherichia coli strain SM107]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=786475 Q4S51_RS15045 WP_000839153.1 3088853..3089482(-) (sxy/tfoX) [Escherichia coli strain SM107]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1