Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   Q3V86_RS10645 Genome accession   NZ_CP130547
Coordinates   2093616..2094329 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain SA04-SX     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088616..2099329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V86_RS10580 - 2089369..2089632 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V86_RS10585 - 2089641..2089901 (-) 261 WP_072456798.1 DUF1108 family protein -
  Q3V86_RS10590 - 2089906..2090208 (-) 303 WP_044131919.1 DUF2482 family protein -
  Q3V86_RS10595 - 2090300..2090461 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  Q3V86_RS10600 - 2090458..2090778 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  Q3V86_RS10605 - 2090837..2091469 (+) 633 WP_000275058.1 hypothetical protein -
  Q3V86_RS10610 - 2091484..2091624 (-) 141 WP_000939496.1 hypothetical protein -
  Q3V86_RS10615 - 2091655..2091852 (-) 198 WP_001148861.1 hypothetical protein -
  Q3V86_RS10620 - 2091868..2092620 (-) 753 WP_113556758.1 phage antirepressor KilAC domain-containing protein -
  Q3V86_RS10625 - 2092671..2093000 (+) 330 WP_000180411.1 hypothetical protein -
  Q3V86_RS10630 - 2092989..2093204 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  Q3V86_RS10635 - 2093220..2093483 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  Q3V86_RS10640 - 2093480..2093653 (-) 174 WP_001801500.1 hypothetical protein -
  Q3V86_RS10645 irvR 2093616..2094329 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  Q3V86_RS10650 - 2094345..2095277 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  Q3V86_RS10655 - 2095283..2095624 (+) 342 WP_164098959.1 hypothetical protein -
  Q3V86_RS10660 - 2095828..2096010 (+) 183 WP_000705248.1 hypothetical protein -
  Q3V86_RS10665 - 2096110..2096574 (+) 465 WP_000825947.1 hypothetical protein -
  Q3V86_RS10670 - 2096633..2097670 (+) 1038 WP_000857191.1 site-specific integrase -
  Q3V86_RS10675 sph 2097721..2098551 (+) 831 Protein_2068 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=785503 Q3V86_RS10645 WP_001031454.1 2093616..2094329(+) (irvR) [Staphylococcus aureus strain SA04-SX]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=785503 Q3V86_RS10645 WP_001031454.1 2093616..2094329(+) (irvR) [Staphylococcus aureus strain SA04-SX]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401