Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PIB32_RS14405 Genome accession   NZ_CP116898
Coordinates   3441716..3443209 (+) Length   497 a.a.
NCBI ID   WP_308364281.1    Uniprot ID   -
Organism   Microbulbifer sp. RZ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3436716..3448209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB32_RS14370 - 3436744..3437472 (+) 729 WP_308364274.1 DUF484 family protein -
  PIB32_RS14375 - 3437594..3437818 (-) 225 WP_183459085.1 hypothetical protein -
  PIB32_RS14380 - 3438128..3438466 (-) 339 WP_183459087.1 P-II family nitrogen regulator -
  PIB32_RS14385 - 3438546..3439805 (-) 1260 WP_308364275.1 ammonium transporter -
  PIB32_RS14390 - 3439888..3440226 (-) 339 WP_308364277.1 P-II family nitrogen regulator -
  PIB32_RS14395 - 3440269..3440994 (-) 726 WP_308364279.1 TorF family putative porin -
  PIB32_RS14400 - 3441438..3441686 (+) 249 WP_308364280.1 accessory factor UbiK family protein -
  PIB32_RS14405 comM 3441716..3443209 (+) 1494 WP_308364281.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PIB32_RS14410 - 3443456..3446050 (+) 2595 WP_308364282.1 immunoglobulin-like domain-containing protein -
  PIB32_RS14415 - 3446167..3446463 (+) 297 WP_308364284.1 LamG domain-containing protein -
  PIB32_RS14420 - 3446689..3447993 (-) 1305 WP_308364285.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53267.83 Da        Isoelectric Point: 7.0310

>NTDB_id=780973 PIB32_RS14405 WP_308364281.1 3441716..3443209(+) (comM) [Microbulbifer sp. RZ01]
MSLSVTYTRAQLGVAAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALVNSHFEFPQRRITVNLAPADLPKEGGR
YDLAIAIGILAASGQVPCEPLESYEFVGELALTGKLRQVNGALPAAIACGDAGRTLVVPRESAGEAALSGTGVKAAETLL
QVCAQLHGREPLPDAEPTDGERDPLCADLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLEQRE
LIEVAAIYSSAGLPSVRQRPYRSPHHSASAISLVGGGSSPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLESGEVRI
SRARAQVTFPADFQLVGAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVASMSAAQLQDAPTGESSATV
RERVLLARDRQLQRQGMINAQLAGAELDRFCALGKSEQTLLRHSVEQLGLSARSYHRVLKVARTLADLAGEENIGAGQIA
EALAYRNLDRRQIPANV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=780973 PIB32_RS14405 WP_308364281.1 3441716..3443209(+) (comM) [Microbulbifer sp. RZ01]
TTGAGCCTTTCCGTCACCTATACCCGCGCCCAACTGGGCGTCGCCGCACCACTGGTCACCGTGGAGACCCACCTGGCCAA
CGGCCTGCCCGCTTTCCATATTGTCGGCCTGCCGGAGGCCGCGGTGCGTGAGAGCCGCGACCGGGTGCGCAGTGCCCTCG
TCAACAGCCACTTCGAATTCCCCCAGCGGCGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGC
TACGACTTGGCGATTGCCATCGGTATTCTCGCCGCCTCCGGCCAGGTTCCCTGCGAACCCCTGGAAAGCTACGAATTTGT
CGGCGAACTGGCGCTCACCGGTAAGCTGCGTCAGGTCAACGGCGCCCTCCCCGCCGCCATCGCCTGCGGCGACGCCGGGC
GCACCCTGGTGGTGCCTCGGGAATCCGCCGGCGAGGCGGCGCTGTCCGGCACCGGAGTGAAAGCCGCGGAGACCCTGCTG
CAGGTGTGCGCGCAACTGCACGGCCGCGAGCCGCTGCCGGACGCGGAACCTACCGATGGGGAACGGGATCCCCTGTGCGC
CGACCTGGCGGATGTACGCGGCCAGCTGAAAGCGCGCCGCGCCCTGGAAGTGGCCGCCGCCGGCGGCCACAACCTGCTCT
TCTACGGGCCCCCGGGCACCGGCAAGACCATGCTCGCCAGCCGTCTGCCGGGCATACTGCCGCCGCTGGAGCAGCGGGAA
CTGATCGAAGTGGCCGCCATTTATTCCAGCGCCGGATTGCCCTCCGTGCGTCAGCGCCCCTACCGTTCGCCCCATCATAG
TGCTTCCGCCATTTCCCTGGTGGGAGGCGGGAGCAGCCCACGGCCGGGAGAGATATCCCTGGCTCACCGCGGCGTGCTCT
TCCTGGACGAGATGCCGGAATTCCCCCGCCACGCCCTGGAGATACTGCGCGAACCGCTGGAAAGCGGCGAGGTGCGTATT
TCCCGCGCGCGGGCGCAGGTCACCTTCCCCGCGGATTTCCAGTTGGTCGGCGCCATGAACCCCTGCCCCTGCGGCTACCT
GGGCGAGCCCCGCTGCCGCTGTACCCCGGACCAGATAGATCGCTACCGCAACAAACTCTCCGGCCCGCTGCTGGACCGCA
TCGATATGCAGGTGGAGGTGGCGAGCATGAGCGCCGCACAGCTGCAGGACGCGCCCACGGGGGAATCCTCGGCGACAGTG
CGCGAACGGGTGCTGCTGGCAAGGGATCGGCAGCTGCAAAGGCAGGGGATGATCAACGCGCAGTTGGCCGGTGCGGAGCT
GGACCGCTTCTGCGCACTCGGCAAAAGCGAACAGACTTTATTGCGGCACTCGGTGGAGCAGCTCGGGCTTTCCGCACGCA
GTTATCACCGCGTGTTAAAAGTCGCGCGCACCCTGGCCGACCTCGCCGGTGAGGAAAATATCGGTGCGGGGCAGATTGCC
GAGGCGCTGGCCTATCGCAATCTGGACCGGCGGCAGATACCGGCAAATGTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.582

100

0.551
  comM Haemophilus influenzae Rd KW20

53.877

100

0.545
  comM Glaesserella parasuis strain SC1401

54.092

100

0.545
  comM Vibrio campbellii strain DS40M4

54.527

100

0.545
  comM Legionella pneumophila str. Paris

49.501

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.501

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.85

100

0.479