Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   PPM66_RS11240 Genome accession   NZ_CP116867
Coordinates   2151436..2151867 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146436..2156867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS11190 sinI 2146630..2146803 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  PPM66_RS11195 sinR 2146837..2147172 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PPM66_RS11200 tasA 2147265..2148050 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  PPM66_RS11205 sipW 2148114..2148686 (-) 573 WP_003246088.1 signal peptidase I SipW -
  PPM66_RS11210 tapA 2148670..2149431 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  PPM66_RS11215 yqzG 2149703..2150029 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  PPM66_RS11220 spoIITA 2150071..2150250 (-) 180 WP_003230176.1 YqzE family protein -
  PPM66_RS11225 comGG 2150321..2150695 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  PPM66_RS11230 comGF 2150696..2151079 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  PPM66_RS11235 comGE 2151105..2151452 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  PPM66_RS11240 comGD 2151436..2151867 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  PPM66_RS11245 comGC 2151857..2152153 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  PPM66_RS11250 comGB 2152167..2153204 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  PPM66_RS11255 comGA 2153191..2154261 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  PPM66_RS11260 corA 2154673..2155626 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=780467 PPM66_RS11240 WP_004398628.1 2151436..2151867(-) (comGD) [Bacillus subtilis subsp. subtilis strain MGP008]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=780467 PPM66_RS11240 WP_004398628.1 2151436..2151867(-) (comGD) [Bacillus subtilis subsp. subtilis strain MGP008]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1