Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PNF29_RS13360 Genome accession   NZ_CP116773
Coordinates   2517961..2518239 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM125727     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512961..2523239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS13340 (PNF29_13340) ade 2513025..2514758 (-) 1734 WP_144453906.1 adenine deaminase -
  PNF29_RS13345 (PNF29_13345) ktrC 2514914..2515579 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PNF29_RS13350 (PNF29_13350) ykqA 2515642..2516469 (-) 828 WP_144453908.1 gamma-glutamylcyclotransferase -
  PNF29_RS13355 (PNF29_13355) kinC 2516485..2517771 (-) 1287 WP_144453910.1 two-component sensor histidine kinase KinC -
  PNF29_RS13360 (PNF29_13360) abrB 2517961..2518239 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PNF29_RS13365 (PNF29_13365) mreBH 2518523..2519530 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PNF29_RS13370 (PNF29_13370) ykpC 2519631..2519765 (+) 135 WP_003238865.1 protein YkpC -
  PNF29_RS13375 (PNF29_13375) ampS 2519874..2521106 (+) 1233 WP_003232341.1 aminopeptidase -
  PNF29_RS13380 (PNF29_13380) panEB 2521140..2522051 (-) 912 WP_272515578.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=780119 PNF29_RS13360 WP_003244728.1 2517961..2518239(-) (abrB) [Bacillus subtilis strain SRCM125727]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=780119 PNF29_RS13360 WP_003244728.1 2517961..2518239(-) (abrB) [Bacillus subtilis strain SRCM125727]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576