Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QY866_RS10040 Genome accession   NZ_CP129530
Coordinates   1969116..1971413 (+) Length   765 a.a.
NCBI ID   WP_341843956.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1964116..1976413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS10015 (QY866_10005) - 1964678..1965313 (-) 636 WP_232321162.1 pentapeptide repeat-containing protein -
  QY866_RS10020 (QY866_10010) - 1965378..1966175 (-) 798 WP_016264612.1 DNA/RNA non-specific endonuclease -
  QY866_RS10025 (QY866_10015) - 1966168..1967535 (-) 1368 WP_341843955.1 MATE family efflux transporter -
  QY866_RS10030 (QY866_10020) - 1967505..1967726 (-) 222 WP_143457235.1 hypothetical protein -
  QY866_RS10035 (QY866_10025) trpS 1967744..1968760 (-) 1017 WP_096585441.1 tryptophan--tRNA ligase -
  QY866_RS10040 (QY866_10030) helD 1969116..1971413 (+) 2298 WP_341843956.1 RNA polymerase recycling motor HelD Machinery gene
  QY866_RS10050 (QY866_10040) - 1971621..1972502 (-) 882 WP_251945162.1 HAD family hydrolase -
  QY866_RS10055 (QY866_10045) - 1972662..1972877 (+) 216 WP_011374032.1 DUF2187 family protein -
  QY866_RS10060 (QY866_10050) - 1972926..1973777 (-) 852 WP_056947760.1 YitT family protein -
  QY866_RS10065 (QY866_10055) - 1973851..1975272 (-) 1422 WP_056947754.1 C69 family dipeptidase -
  QY866_RS10070 (QY866_10060) - 1975330..1975683 (-) 354 WP_011374029.1 PqqD family protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87018.20 Da        Isoelectric Point: 4.6079

>NTDB_id=779926 QY866_RS10040 WP_341843956.1 1969116..1971413(+) (helD) [Latilactobacillus sakei strain A1262]
MLQEDTQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTSQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSHLEADQMVLFSPNRLFSHYISEVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAIRHFKESAPFMQQITDYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPAIIPV
AVWEAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTVLGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLSKETALQAFSRDGRLPRVITATKEASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQSSDV
DLLYTLMTRAMHDLTLLGIGTLSPLITSLDPQYYQNITTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=779926 QY866_RS10040 WP_341843956.1 1969116..1971413(+) (helD) [Latilactobacillus sakei strain A1262]
ATGCTACAAGAAGATACGCAACAACAAGAACAAGCCCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAGCAATTGGACAATGCCTATAATGAAACTAAAGATATTGAACAACGTTATGGTGATACTACCAAGGTCAATA
TTACGGAGGTCGATGACCGGATGGAAACCAATGCCGCCGTCCAACAGCAAAAACAACTAGTCGCAGCGGCCGTTGAAAAC
GAAAAACTCCTAACGTCACAACAAAAACGGCTAACGGATTTAGTCGACTCTCCTTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAGGAAGAATCACTCTACATCGGGACCGCCACTTTTATCAACGAGCAAGACCAATTCTTGGTTTACGATTGGC
GAGCACCCATTGCTAGTATTTACTATAATGGCACATTAGGAACCGTCAGTTACGACACGCCTAATGGCCCCGTTAAAGTT
GATTTAACACTAAAACGACAGTTCAAGATTAAAAACGGTCAAATTGAACATCTTTTTGATACAAACGAAACAGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGTGATGAGTACATGCAAAATATCGTTGCAACAATTCAAAAAGAACAAA
ATGATATTATCCGTGATACGACTGCCGATTTACTAATTGTCCAAGGCGTCGCTGGCAGCGGTAAAACCTCCGCTGTTTTA
CAACGCATCGCTTTCTTACTCTATCACAGTCGTAGTCACTTAGAAGCCGATCAAATGGTCCTTTTTTCACCTAATCGCTT
ATTCAGTCACTATATTTCTGAGGTGCTGCCTAGTTTAGGGGAAAAGAATATGCGCCAAGTGACGATGGCTGAATTTTTAA
GTCATCGTTTCTCGGGGCTTCAAGTTGAAACACTCTTCGATCGTTTTGAAAAAGACCAAGCGAGTTTCCCAGAAATGACG
CAAGCAATACGCCACTTTAAAGAAAGTGCCCCCTTTATGCAACAAATTACGGATTATGTTAAACAGGTTTCTACACAGCC
ATTGGCCTTCAATGACCTCTACTTTGAAGATCGTCCGTTCTTCACAAAAGCGCAAATTAATAAAATTTATCTCGATCTCC
CACATAATATGCGTCCCGGTGATAAATTTATTGCCACTAAAAATACCCTCATTAAACGACTCAAACGCCAAATTAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCAGATGATGACTACCGTGCCATCGTCGGTGATCGCGA
ATTTGATTCTGGCGATTTAGAACAAGCATTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCCGATTTATACGATGCTA
TTTATAACGATTACTTTTTGGATGTGTATACTGAATATCAAAACTTCTTACGGACAGCTTGTCCGGCTATAATTCCGGTT
GCCGTTTGGGAAGCAATGATTGAAACAGTCGCTCAAAATAATGAACGCCACCTCGTCGGTTTAAGTGACGCAGCGCCAAT
TCTGTATCTCCGTGATTTATTAACCGATAGTGGTCAAAATCACAGCATTCAATACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTCGTTTATCTCCAGCATGCTTTCCCGAACGCTAAATTCACCGTGCTCGGCGATTACGCGCAGGAC
GTCTTTACCGCTACTTATCAAGCCGGTAATTTCATTGAACGCCTCTGCGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
TAGTTTGACGAAGAGCTATCGCGCGACTGCCCCCATCACGAATTTCGCAAAAGCCTTATTGTCTAAAGAAACAGCCTTGC
AAGCCTTTAGTCGTGATGGACGGCTCCCTCGTGTCATCACAGCCACTAAGGAAGCTAGTTTAAATGCCTTAACGCAAGAA
ATTTTCCACCTACAAAAACGGCATGCAACTATCGCCATTTTAACCAAGGATCAACAAACGGCGCGCCAACTTTTCGCCAG
CCTGACTCCCGATGATCAGGTAACACTCATCTCCGAAACCACCCGCTCATTGCCAAAAGGTGTTTTAGTATTACCGTTAT
ATCTCGCTAAAGGTCTCGAATTCGATGCTGTCATTGGTTACGACATTTCAGCAACCACCTTTGGCCAATCAAGTGACGTT
GACTTACTCTACACACTGATGACGCGTGCCATGCACGACTTAACCTTGTTGGGAATTGGTACCCTCAGCCCACTCATTAC
TAGCCTCGATCCTCAATACTACCAAAACATTACAACCACTAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.985

100

0.375