Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QY866_RS06400 Genome accession   NZ_CP129530
Coordinates   1280958..1282403 (+) Length   481 a.a.
NCBI ID   WP_011374722.1    Uniprot ID   Q38WV9
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275958..1287403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06365 (QY866_06355) - 1276186..1276554 (+) 369 WP_011374729.1 hypothetical protein -
  QY866_RS06370 (QY866_06360) - 1276563..1277318 (+) 756 WP_056946646.1 segregation/condensation protein A -
  QY866_RS06375 (QY866_06365) scpB 1277302..1277925 (+) 624 WP_011374727.1 SMC-Scp complex subunit ScpB -
  QY866_RS06380 (QY866_06370) - 1277928..1278698 (+) 771 WP_011374726.1 pseudouridine synthase -
  QY866_RS06385 (QY866_06375) - 1279013..1279588 (+) 576 WP_341843920.1 ECF transporter S component -
  QY866_RS06390 (QY866_06380) - 1279666..1279896 (-) 231 WP_011374724.1 ferredoxin -
  QY866_RS06395 (QY866_06385) - 1279933..1280961 (+) 1029 WP_011374723.1 helix-turn-helix domain-containing protein -
  QY866_RS06400 (QY866_06390) recS 1280958..1282403 (+) 1446 WP_011374722.1 RecQ family ATP-dependent DNA helicase Machinery gene
  QY866_RS06405 (QY866_06395) - 1282472..1283173 (+) 702 WP_056946639.1 LysM domain-containing protein -
  QY866_RS06410 (QY866_06400) cmk 1283240..1283899 (+) 660 WP_011374720.1 (d)CMP kinase -
  QY866_RS06415 (QY866_06405) rpsA 1283994..1285205 (+) 1212 WP_025015758.1 30S ribosomal protein S1 -
  QY866_RS06420 (QY866_06410) der 1285439..1286749 (+) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  QY866_RS06425 (QY866_06415) - 1286956..1287231 (+) 276 WP_011374717.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54369.15 Da        Isoelectric Point: 5.4500

>NTDB_id=779893 QY866_RS06400 WP_011374722.1 1280958..1282403(+) (recS) [Latilactobacillus sakei strain A1262]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIKSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAA
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVKKSQGPGIVYFSS
RQKTMAIATFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRFVIHYHLPQNIESYLQEI
GRAGRDGQAAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGSEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=779893 QY866_RS06400 WP_011374722.1 1280958..1282403(+) (recS) [Latilactobacillus sakei strain A1262]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTAAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACCGGGAAATCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TATCAAGGGGAAAAACGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGACTTTAGACCGGACTATTTAGTTTTAGCAGCC
ATTAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGAAAAAAAGCCAGGGTCCCGGGATTGTTTATTTTTCAAGT
CGGCAAAAGACAATGGCGATTGCAACCTTTTTACAACAGGAGACTGATCTAAAAATTGCTTATTACCACGCAGCGTTATC
AACCCAGGAGCGGTATTTAATTCAACAACAATTTATGCAAGGACAACTCGATTTAATTTGTACCACCAATGCTTTTGGGA
TGGGGATTAACAAAGCGGATATTCGCTTTGTGATTCATTATCACTTGCCACAAAATATCGAAAGTTATCTACAAGAAATT
GGACGAGCAGGTCGAGATGGGCAAGCAGCGTATGCTTTAGTCCTAACAACCCCGCAAGATTTATATTTACAACAATCACT
CGTATCATTTGGGATTCCGGAACCCGGACTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
GTGAATTTGAACTGTTGCGTCGTTACCAACAACTGGGGATGACCGAAGAAGAGGTGACTGCCTTATTGGATAATCGCCAA
ACTGAAAAACAATTTTCATTACAAACAATGTTGGATTATTTGACGCTCAAGGGCTGCCGGCGTCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(219-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

41.372

93.971

0.389