Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QY867_RS09350 Genome accession   NZ_CP129529
Coordinates   1819338..1819949 (-) Length   203 a.a.
NCBI ID   WP_011374075.1    Uniprot ID   Q38YR0
Organism   Latilactobacillus sakei strain A1291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1814338..1824949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS09330 (QY867_09315) arcA 1815282..1816517 (-) 1236 WP_056947797.1 arginine deiminase -
  QY867_RS09335 (QY867_09320) - 1816723..1817244 (-) 522 WP_056947794.1 GNAT family protein -
  QY867_RS09340 (QY867_09325) queA 1817271..1818302 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QY867_RS09345 (QY867_09330) ruvB 1818324..1819325 (-) 1002 Protein_1784 Holliday junction branch migration DNA helicase RuvB -
  QY867_RS09350 (QY867_09335) ruvA 1819338..1819949 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  QY867_RS09355 (QY867_09340) - 1820360..1820923 (-) 564 Protein_1786 TIGR00730 family Rossman fold protein -
  QY867_RS09360 (QY867_09345) - 1820936..1821481 (-) 546 WP_056947792.1 Maf family protein -
  QY867_RS09365 (QY867_09350) hexB 1821481..1823442 (-) 1962 WP_056947790.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22143.35 Da        Isoelectric Point: 4.8129

>NTDB_id=779836 QY867_RS09350 WP_011374075.1 1819338..1819949(-) (ruvA) [Latilactobacillus sakei strain A1291]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=779836 QY867_RS09350 WP_011374075.1 1819338..1819949(-) (ruvA) [Latilactobacillus sakei strain A1291]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.293

100

0.488
  ruvA Streptococcus pneumoniae R6

48.293

100

0.488
  ruvA Streptococcus pneumoniae D39

48.293

100

0.488
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463