Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVN05_RS15470 Genome accession   NZ_CP128912
Coordinates   3164050..3164679 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM13773     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159050..3169679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN05_RS15455 (QVN05_15455) helD 3159292..3161346 (-) 2055 WP_001350178.1 DNA helicase IV -
  QVN05_RS15460 (QVN05_15460) yccF 3161469..3161915 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QVN05_RS15465 (QVN05_15465) yccS 3161925..3164087 (+) 2163 WP_000875008.1 YccS family putative transporter -
  QVN05_RS15470 (QVN05_15470) sxy/tfoX 3164050..3164679 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QVN05_RS15475 (QVN05_15475) sulA 3164898..3165407 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QVN05_RS15480 (QVN05_15480) ompA 3165763..3166803 (+) 1041 WP_001518466.1 porin OmpA -
  QVN05_RS15485 (QVN05_15485) matP 3166879..3167331 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  QVN05_RS15490 (QVN05_15490) ycbZ 3167517..3169277 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775772 QVN05_RS15470 WP_000839153.1 3164050..3164679(-) (sxy/tfoX) [Escherichia coli strain TUM13773]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775772 QVN05_RS15470 WP_000839153.1 3164050..3164679(-) (sxy/tfoX) [Escherichia coli strain TUM13773]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1