Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PFY08_RS06510 Genome accession   NZ_CP115856
Coordinates   1253979..1254302 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain PL22-16A     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248979..1259302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY08_RS06485 (PFY08_06485) - 1249328..1250614 (+) 1287 WP_098212772.1 D-alanyl-D-alanine carboxypeptidase family protein -
  PFY08_RS06490 (PFY08_06490) sipW 1250805..1251374 (+) 570 WP_000767792.1 signal peptidase I SipW -
  PFY08_RS06495 (PFY08_06495) - 1251435..1252022 (+) 588 WP_000172852.1 CalY family protein -
  PFY08_RS06500 (PFY08_06500) - 1252142..1252927 (+) 786 WP_144572582.1 DUF4047 domain-containing protein -
  PFY08_RS06505 (PFY08_06505) calY 1253313..1253906 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  PFY08_RS06510 (PFY08_06510) sinR 1253979..1254302 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  PFY08_RS06515 (PFY08_06515) - 1254382..1254516 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  PFY08_RS06520 (PFY08_06520) inhA1 1254859..1257249 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  PFY08_RS06525 (PFY08_06525) - 1257421..1258787 (+) 1367 Protein_1195 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=773992 PFY08_RS06510 WP_000578885.1 1253979..1254302(-) (sinR) [Bacillus cereus strain PL22-16A]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=773992 PFY08_RS06510 WP_000578885.1 1253979..1254302(-) (sinR) [Bacillus cereus strain PL22-16A]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692