Detailed information NTG0773956

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QTN45_RS18275
• Genome accession: NZ_CP128500
• Coordinates: 3562304..3563425 (-)
• Length: 373 a.a.
• NCBI ID: WP_013350919.1
• Uniprot ID: A0A9P1NGF1
• Organism: Bacillus amyloliquefaciens strain SRCM123364
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3557304..3568425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN45_RS18250 (QTN45_18250)	-	3557455..3558414 (-)	960	WP_013350924.1	metal ABC transporter substrate-binding protein	-
QTN45_RS18255 (QTN45_18255)	-	3558623..3559168 (+)	546	WP_013350923.1	PadR family transcriptional regulator	-
QTN45_RS18260 (QTN45_18260)	-	3559169..3559663 (+)	495	WP_013350922.1	DUF4188 domain-containing protein	-
QTN45_RS18265 (QTN45_18265)	-	3559648..3561327 (-)	1680	WP_289412549.1	alpha-glucosidase	-
QTN45_RS18270 (QTN45_18270)	-	3561411..3562190 (-)	780	WP_013350920.1	glucose 1-dehydrogenase	-
QTN45_RS18275 (QTN45_18275)	rapF	3562304..3563425 (-)	1122	WP_013350919.1	tetratricopeptide repeat protein	Regulator
QTN45_RS18280 (QTN45_18280)	-	3563535..3564038 (+)	504	WP_014469700.1	M15 family metallopeptidase	-
QTN45_RS18285 (QTN45_18285)	-	3564035..3565393 (-)	1359	WP_014469699.1	YcdB/YcdC domain-containing protein	-
QTN45_RS18290 (QTN45_18290)	-	3565595..3566992 (-)	1398	WP_014469698.1	YcdB/YcdC domain-containing protein	-
QTN45_RS18295 (QTN45_18295)	-	3567110..3568105 (+)	996	WP_013350915.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44347.46 Da
• Isoelectric Point: 5.0035

>NTDB_id=773956 QTN45_RS18275 WP_013350919.1 3562304..3563425(-) (rapF) [Bacillus amyloliquefaciens strain SRCM123364]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=773956 QTN45_RS18275 WP_013350919.1 3562304..3563425(-) (rapF) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTAGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAACCTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCACTATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTATGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATTAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAGCTGTTGGCCGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

3D structure

• AlphaFold DB: A0A9P1NGF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402