Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QSJ13_RS05220 Genome accession   NZ_CP128372
Coordinates   1094234..1095727 (+) Length   497 a.a.
NCBI ID   WP_031980686.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH2146     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089234..1100727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS05195 (QSJ13_05195) uppS 1089275..1090027 (-) 753 WP_000132219.1 polyprenyl diphosphate synthase -
  QSJ13_RS05200 (QSJ13_05200) frr 1090033..1090587 (-) 555 WP_000606428.1 ribosome recycling factor -
  QSJ13_RS05205 (QSJ13_05205) pyrH 1090673..1091401 (-) 729 WP_000852257.1 UMP kinase -
  QSJ13_RS05210 (QSJ13_05210) rimO 1091453..1092796 (-) 1344 WP_000856678.1 30S ribosomal protein S12 methylthiotransferase RimO -
  QSJ13_RS05215 (QSJ13_05220) glnL 1093138..1094247 (+) 1110 WP_000371970.1 nitrogen regulation protein NR(II) -
  QSJ13_RS05220 (QSJ13_05225) luxO 1094234..1095727 (+) 1494 WP_031980686.1 nitrogen regulation protein NR(I) Regulator
  QSJ13_RS05225 (QSJ13_05230) adeN 1096003..1096656 (+) 654 WP_000543879.1 multidrug efflux transcriptional repressor AdeN -
  QSJ13_RS05230 (QSJ13_05235) argF 1096769..1097689 (+) 921 WP_001207983.1 ornithine carbamoyltransferase -
  QSJ13_RS05235 (QSJ13_05240) - 1097884..1098408 (+) 525 WP_000209131.1 protein tyrosine phosphatase family protein -
  QSJ13_RS05240 (QSJ13_05245) ispF 1098405..1098887 (-) 483 WP_000226512.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QSJ13_RS05245 (QSJ13_05250) - 1098991..1099635 (+) 645 WP_001139836.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56241.07 Da        Isoelectric Point: 6.3154

>NTDB_id=773499 QSJ13_RS05220 WP_031980686.1 1094234..1095727(+) (luxO) [Acinetobacter baumannii strain XH2146]
MSRNKIWVIDDDRAMRWVLEKTFKEEGFDVTNFEEAQTALERLHHDAPDVILTDIRMPGIDGLTFLSKVKNSHPDLPVII
MTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAILHINKLQQQEATKTASPLQSTEIIGESPAMQEVFRAIGRLS
QSHITVLINGESGTGKELVAHALHKHSPRRAKLFIALNMAAIPKDLIETELFGHEKGAFTGANTQHQGRFEQANGGTLFL
DEIGDMPFETQTRLLRVLADGEFYRVGGHIPVKVDVRIVAATHQDLEKLVNEGRFREDLYHRLNVIRIHIPKLAHRSEDI
PMLAQHFLARAGKELGVSPKILRTETTDYMQQLPWPGNVRQLENTCRWLTVMITGREVYPEDLPSELKQVPLQKSSETSQ
PAPSFERISLHHWDELLSQWAIQKLKNGEMKILDIATPMFERTLINAALQQTRGRKRHAAELLGWGRNTLTRKLKELGMD
SADDDDEDEHKATLSEA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=773499 QSJ13_RS05220 WP_031980686.1 1094234..1095727(+) (luxO) [Acinetobacter baumannii strain XH2146]
GTGTCGCGAAATAAAATATGGGTTATTGATGACGATCGCGCCATGCGATGGGTACTTGAAAAGACCTTTAAAGAAGAAGG
ATTTGACGTCACCAATTTTGAAGAAGCTCAAACAGCACTTGAACGTTTACATCATGATGCGCCCGATGTCATCTTAACTG
ACATTCGTATGCCAGGTATTGATGGGTTAACTTTCTTATCTAAAGTGAAAAACTCTCACCCCGACTTGCCTGTTATCATT
ATGACAGCGCATTCGGACTTAGAGTCTGCTGTATCAAGCTATCAGACTGGTGCATTTGAGTATTTACCAAAACCATTCGA
TATTGATGAAGCTTTAGCTTTAGTCAATCGAGCAATTTTGCATATCAATAAGTTGCAGCAGCAAGAAGCGACAAAAACAG
CTTCACCACTACAATCAACAGAAATTATTGGCGAGTCTCCTGCTATGCAAGAGGTTTTCCGAGCGATTGGTCGTTTATCT
CAGTCGCATATTACCGTTTTAATTAATGGTGAATCAGGCACAGGTAAAGAACTGGTTGCGCATGCTTTACATAAACATTC
TCCACGACGCGCTAAGCTTTTTATTGCTTTAAACATGGCAGCAATTCCTAAAGATTTAATCGAAACGGAATTATTTGGTC
ATGAAAAAGGTGCTTTCACGGGTGCAAACACCCAACATCAAGGCCGCTTTGAACAAGCAAATGGCGGAACACTATTTCTT
GATGAAATTGGTGACATGCCCTTTGAAACACAAACTCGATTGTTACGTGTGCTCGCAGATGGTGAGTTTTACCGGGTTGG
TGGTCATATACCGGTTAAAGTAGATGTCAGAATTGTCGCGGCAACCCATCAAGACTTAGAAAAACTGGTGAATGAAGGTC
GTTTTCGTGAAGACTTATACCATCGTCTAAATGTTATTCGAATTCATATTCCTAAGCTTGCACATCGCAGTGAAGACATC
CCGATGCTGGCTCAACATTTCTTGGCTCGCGCGGGTAAAGAGCTAGGCGTAAGTCCAAAAATTTTGCGCACTGAAACAAC
GGACTATATGCAACAATTACCATGGCCTGGTAATGTTCGTCAGCTTGAAAATACCTGCCGTTGGTTAACCGTCATGATTA
CTGGTCGTGAGGTTTATCCAGAAGATTTACCTTCTGAGCTTAAACAGGTTCCACTCCAAAAAAGTAGTGAGACTAGTCAA
CCAGCACCATCTTTTGAACGTATTTCTTTGCACCATTGGGATGAGCTACTAAGCCAATGGGCAATTCAAAAACTTAAAAA
TGGTGAAATGAAGATTTTAGACATTGCTACTCCAATGTTTGAGCGCACCTTAATTAATGCAGCACTACAGCAAACTCGTG
GGCGCAAACGTCATGCAGCCGAGCTGTTAGGTTGGGGTCGTAACACCCTAACCAGAAAGTTAAAAGAGCTAGGCATGGAT
TCTGCTGATGACGATGATGAGGACGAACATAAAGCAACATTGTCAGAAGCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-477)

Sigma-54 interaction domain (Sigma54_activat)

(142-309)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

40

90.543

0.362