Detailed information NTG0773091

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF575_RS09855
• Genome accession: NZ_CP115639
• Coordinates: 2041960..2042661 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2022CK-00241
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2036960..2047661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF575_RS09825 (PF575_09825)	-	2037267..2037710 (-)	444	WP_001246676.1	SRPBCC family protein	-
PF575_RS09830 (PF575_09830)	tadA	2037780..2038283 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
PF575_RS09835 (PF575_09835)	-	2038290..2039414 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
PF575_RS09840 (PF575_09840)	ung	2039411..2040124 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF575_RS09845 (PF575_09845)	-	2040175..2040771 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF575_RS09850 (PF575_09850)	gspK	2041001..2041960 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
PF575_RS09855 (PF575_09855)	xcpW	2041960..2042661 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF575_RS09860 (PF575_09860)	xcpV	2042661..2043041 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF575_RS09865 (PF575_09865)	-	2043031..2043585 (-)	555	WP_000841373.1	type II secretion system protein	-
PF575_RS09870 (PF575_09870)	-	2043595..2044203 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF575_RS09875 (PF575_09875)	-	2044241..2045014 (-)	774	WP_000497298.1	TatD family hydrolase	-
PF575_RS09880 (PF575_09880)	-	2045032..2045373 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
PF575_RS09885 (PF575_09885)	-	2045385..2046365 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF575_RS09890 (PF575_09890)	kdsB	2046377..2047138 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=773091 PF575_RS09855 WP_000594572.1 2041960..2042661(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00241]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=773091 PF575_RS09855 WP_000594572.1 2041960..2042661(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00241]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991