Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QRT07_RS08105 Genome accession   NZ_CP127846
Coordinates   1697194..1698738 (+) Length   514 a.a.
NCBI ID   WP_025634591.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692194..1703738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS08080 (QRT07_08080) - 1692495..1692815 (+) 321 WP_005454817.1 STAS domain-containing protein -
  QRT07_RS08085 (QRT07_08085) - 1692842..1693744 (+) 903 WP_005495092.1 OmpA family protein -
  QRT07_RS08090 (QRT07_08090) - 1693777..1695843 (+) 2067 WP_049877691.1 SLBB domain-containing protein -
  QRT07_RS08095 (QRT07_08095) - 1695843..1696529 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  QRT07_RS08100 (QRT07_08100) - 1696542..1696922 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  QRT07_RS08105 (QRT07_08105) luxO 1697194..1698738 (+) 1545 WP_025634591.1 sigma-54 dependent transcriptional regulator Regulator
  QRT07_RS08110 (QRT07_08110) - 1698713..1699783 (+) 1071 WP_286089391.1 glycosyltransferase family 4 protein -
  QRT07_RS08115 (QRT07_08115) - 1699934..1701118 (+) 1185 WP_286089392.1 glycosyltransferase -
  QRT07_RS08120 (QRT07_08120) - 1701129..1702301 (+) 1173 WP_021449094.1 glycosyltransferase family 4 protein -
  QRT07_RS08125 (QRT07_08125) - 1702294..1703724 (+) 1431 WP_021449095.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57430.27 Da        Isoelectric Point: 5.9537

>NTDB_id=773028 QRT07_RS08105 WP_025634591.1 1697194..1698738(+) (luxO) [Vibrio parahaemolyticus strain VP16]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRREKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSSNLNGHNAPAMQTQPIEPVQPVQEAPAQHTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=773028 QRT07_RS08105 WP_025634591.1 1697194..1698738(+) (luxO) [Vibrio parahaemolyticus strain VP16]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAACCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCCGTAAATTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTTAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTTGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAGGCCGTTCATCGCCAAAG
TGATCGCAGAGAAAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTG
GACGAGTTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGTTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGTAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAGCAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACACACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCTGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477