Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QRX37_RS14745 Genome accession   NZ_CP127324
Coordinates   3016305..3017042 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 980-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3011305..3022042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS14730 (QRX37_14705) clpC 3011759..3014332 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  QRX37_RS14735 (QRX37_14710) yfiH 3014462..3015193 (-) 732 WP_000040147.1 purine nucleoside phosphorylase YfiH -
  QRX37_RS14740 (QRX37_14715) rluD 3015190..3016170 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QRX37_RS14745 (QRX37_14720) comL 3016305..3017042 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QRX37_RS14750 (QRX37_14725) - 3017146..3018492 (+) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  QRX37_RS14755 (QRX37_14730) raiA 3018753..3019094 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QRX37_RS14760 (QRX37_14735) pheL 3019198..3019245 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QRX37_RS14765 (QRX37_14740) pheA 3019344..3020504 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  QRX37_RS14770 (QRX37_14745) tyrA 3020547..3021668 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=772313 QRX37_RS14745 WP_000197686.1 3016305..3017042(+) (comL) [Escherichia coli strain 980-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=772313 QRX37_RS14745 WP_000197686.1 3016305..3017042(+) (comL) [Escherichia coli strain 980-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376