Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AVT_RS15090 Genome accession   NZ_CP115303
Coordinates   2935364..2935648 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain JMT105-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930364..2940648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS15075 (AVT_15075) rnmV 2931157..2931714 (-) 558 WP_270184613.1 ribonuclease M5 -
  AVT_RS15080 (AVT_15080) - 2931929..2932696 (-) 768 WP_029439099.1 TatD family hydrolase -
  AVT_RS15085 (AVT_15085) metG 2932863..2934845 (-) 1983 WP_087966745.1 methionine--tRNA ligase -
  AVT_RS15090 (AVT_15090) abrB 2935364..2935648 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AVT_RS15095 (AVT_15095) rsmI 2935669..2936544 (-) 876 WP_029439097.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AVT_RS15100 (AVT_15100) - 2936513..2936803 (-) 291 WP_029439096.1 GIY-YIG nuclease family protein -
  AVT_RS15105 (AVT_15105) - 2936790..2937530 (-) 741 WP_087966747.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AVT_RS15110 (AVT_15110) yabA 2937651..2938004 (-) 354 WP_000412055.1 DNA replication initiation control protein YabA -
  AVT_RS15115 (AVT_15115) - 2938019..2938846 (-) 828 WP_000272429.1 PSP1 domain-containing protein -
  AVT_RS15120 (AVT_15120) holB 2938852..2939835 (-) 984 WP_000978579.1 DNA polymerase III subunit delta' -
  AVT_RS15125 (AVT_15125) tmk 2939871..2940497 (-) 627 WP_087966748.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=771733 AVT_RS15090 WP_000843036.1 2935364..2935648(+) (abrB) [Bacillus tropicus strain JMT105-2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=771733 AVT_RS15090 WP_000843036.1 2935364..2935648(+) (abrB) [Bacillus tropicus strain JMT105-2]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACAGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851