Detailed information NTG0770046

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP12_RS10100
• Genome accession: NZ_CP115242
• Coordinates: 2139287..2140159 (-)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F044
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2134287..2145159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP12_RS10055 (PCP12_10050)	-	2135148..2135318 (-)	171	WP_003094672.1	DUF3094 family protein	-
PCP12_RS10060 (PCP12_10055)	-	2135344..2135793 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
PCP12_RS10065 (PCP12_10060)	-	2135790..2136419 (-)	630	WP_003120948.1	DUF1780 domain-containing protein	-
PCP12_RS10070 (PCP12_10065)	-	2136552..2136977 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP12_RS10075 (PCP12_10070)	-	2136974..2137444 (+)	471	WP_019486073.1	hypothetical protein	-
PCP12_RS10080 (PCP12_10075)	-	2137441..2138130 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP12_RS10085 (PCP12_10080)	-	2138236..2138445 (+)	210	WP_003094660.1	hypothetical protein	-
PCP12_RS10090 (PCP12_10085)	yacG	2138482..2138682 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP12_RS10095 (PCP12_10090)	coaE	2138679..2139290 (-)	612	WP_023114838.1	dephospho-CoA kinase	-
PCP12_RS10100 (PCP12_10095)	pilD	2139287..2140159 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP12_RS10105 (PCP12_10100)	pilC	2140160..2141377 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PCP12_RS10110 (PCP12_10105)	pilB	2141381..2143081 (-)	1701	WP_021205142.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP12_RS10115 (PCP12_10110)	-	2143312..2143776 (+)	465	WP_021205141.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=770046 PCP12_RS10100 WP_003107301.1 2139287..2140159(-) (pilD) [Pseudomonas aeruginosa strain F044]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=770046 PCP12_RS10100 WP_003107301.1 2139287..2140159(-) (pilD) [Pseudomonas aeruginosa strain F044]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469