Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   F6I26_RS01170 Genome accession   NZ_CP126961
Coordinates   208741..209067 (+) Length   108 a.a.
NCBI ID   WP_257360478.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB4708     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203741..214067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS01135 (F6I26_001135) - 205032..205397 (+) 366 WP_024053131.1 DUF1033 family protein -
  F6I26_RS01140 (F6I26_001140) comGA 205467..206408 (+) 942 WP_024053130.1 competence type IV pilus ATPase ComGA Machinery gene
  F6I26_RS01145 (F6I26_001145) comGB 206350..207372 (+) 1023 WP_171021869.1 competence type IV pilus assembly protein ComGB Machinery gene
  F6I26_RS01150 (F6I26_001150) comGC 207369..207686 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  F6I26_RS01155 (F6I26_001155) comGD 207676..208074 (+) 399 WP_022525973.1 competence type IV pilus minor pilin ComGD Machinery gene
  F6I26_RS01160 (F6I26_001160) comGE/cglE 208046..208339 (+) 294 WP_024053127.1 competence type IV pilus minor pilin ComGE Machinery gene
  F6I26_RS01165 (F6I26_001165) comGF/cglF 208323..208760 (+) 438 WP_024053126.1 competence type IV pilus minor pilin ComGF Machinery gene
  F6I26_RS01170 (F6I26_001170) comGG/cglG 208741..209067 (+) 327 WP_257360478.1 competence type IV pilus minor pilin ComGG Machinery gene
  F6I26_RS01175 (F6I26_001175) comGH 209139..210092 (+) 954 WP_024053125.1 class I SAM-dependent methyltransferase Machinery gene
  F6I26_RS01180 (F6I26_001180) - 210139..211338 (+) 1200 WP_024053124.1 acetate kinase -
  F6I26_RS01185 (F6I26_001185) glmS 211739..213553 (+) 1815 WP_024053123.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12833.96 Da        Isoelectric Point: 10.6713

>NTDB_id=769498 F6I26_RS01170 WP_257360478.1 208741..209067(+) (comGG/cglG) [Streptococcus anginosus strain UMB4708]
MWKQKVKAGIMLYALFMAAVFSLLLQFYLQRQTANHRNFTLNRERTQAYAMALLANENSKQREFDKGYVQDQKSEKELIL
TVTMKTGHRYQFSFSAKKEKQMDKKLNK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=769498 F6I26_RS01170 WP_257360478.1 208741..209067(+) (comGG/cglG) [Streptococcus anginosus strain UMB4708]
GTGTGGAAACAGAAAGTTAAAGCGGGCATTATGCTCTATGCACTCTTTATGGCGGCAGTTTTTAGCTTGCTTTTGCAATT
TTACCTTCAGCGTCAAACTGCTAATCATAGAAATTTCACCCTAAACCGAGAACGAACACAGGCTTATGCAATGGCTCTTC
TAGCCAACGAAAATTCTAAGCAAAGGGAATTTGATAAAGGGTATGTCCAAGACCAAAAGAGTGAGAAAGAGCTCATCCTG
ACAGTAACAATGAAGACTGGTCACCGTTATCAATTTTCTTTTTCGGCTAAAAAAGAAAAGCAGATGGATAAAAAATTGAA
TAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

47.059

94.444

0.444
  comGG/cglG Streptococcus mitis SK321

43.137

94.444

0.407
  comGG/cglG Streptococcus pneumoniae TIGR4

41.584

93.519

0.389
  comGG/cglG Streptococcus pneumoniae D39

41.584

93.519

0.389
  comGG/cglG Streptococcus pneumoniae R6

41.584

93.519

0.389
  comGG/cglG Streptococcus pneumoniae Rx1

41.584

93.519

0.389
  comGG Streptococcus mutans UA159

39.806

95.37

0.38
  comGG Streptococcus mutans UA140

39.806

95.37

0.38