Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   F6I26_RS00285 Genome accession   NZ_CP126961
Coordinates   43299..45233 (-) Length   644 a.a.
NCBI ID   WP_070241460.1    Uniprot ID   A0A412PM75
Organism   Streptococcus anginosus strain UMB4708     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 38299..50233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS00265 (F6I26_000265) - 39632..39913 (+) 282 WP_024052903.1 hypothetical protein -
  F6I26_RS00270 (F6I26_000270) purM 39873..40898 (+) 1026 WP_024052902.1 phosphoribosylformylglycinamidine cyclo-ligase -
  F6I26_RS00275 (F6I26_000275) purN 40898..41452 (+) 555 WP_024052901.1 phosphoribosylglycinamide formyltransferase -
  F6I26_RS00280 (F6I26_000280) purH 41693..43240 (+) 1548 WP_024052900.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  F6I26_RS00285 (F6I26_000285) lytF 43299..45233 (-) 1935 WP_070241460.1 GBS Bsp-like repeat-containing protein Regulator
  F6I26_RS00290 (F6I26_000290) purD 45428..46693 (+) 1266 WP_024052898.1 phosphoribosylamine--glycine ligase -
  F6I26_RS00295 (F6I26_000295) - 46683..47108 (+) 426 WP_024052897.1 DUF523 domain-containing protein -
  F6I26_RS00300 (F6I26_000300) purE 47227..47715 (+) 489 WP_003037056.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  F6I26_RS00305 (F6I26_000305) purK 47702..48790 (+) 1089 WP_150888122.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  F6I26_RS00310 (F6I26_000310) - 48802..49026 (+) 225 WP_024052895.1 hypothetical protein -
  F6I26_RS00315 (F6I26_000315) - 49040..49165 (+) 126 WP_257360479.1 hypothetical protein -
  F6I26_RS00320 (F6I26_000320) - 49393..49536 (+) 144 WP_024052894.1 hypothetical protein -

Sequence


Protein


Download         Length: 644 a.a.        Molecular weight: 71121.90 Da        Isoelectric Point: 8.6170

>NTDB_id=769485 F6I26_RS00285 WP_070241460.1 43299..45233(-) (lytF) [Streptococcus anginosus strain UMB4708]
MKKYSQLFLLSNTILGVFSAQLTAQASEADNAQKSSNPAILASNITVNVSGNTASINYTRSQTQVPYTIYHAVWSDENGQ
DDIKWYSAPQTPTTAIDLRQHTGYGTFHVHTYININGKMVGLNGTTFKVEKPASGTVSTTVLGKTAQISFTRNKDQTNAN
ILHAVCSDEKGQDDIKWYTAGQDTTEIDLSNHKGYGVYHVHTYESKNGKMIGLNDTTFNLEKPNPSIQTSFPEPGIMDIQ
IKNVPKTIYKLTVPAWSDRNGQDDLQWYAATKNSDGSYNVRVELKKHNYDIGTYHIHLYGESYVKPEFTGLAGITAQVDA
DKLPSEEEQKPFFSVENINQEQGTYTVKVSETSKSKPIQSVRVPIWSTSNQSNIKWYAATNHGDGTFTTSFDIRNHQVFS
GTYTNHIYVKYKDGSEHSYATDSVAMSAEKIKTKVSVAKRSTYLYEVTVTDAYGDGKISLPTWSEVNGQDDIQWYTATKA
GNGIYKFTVDTQKHTGSGLFHTHVYRNLNGQIIGLTGTRYQVEKPAISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWG
NGGDWAASARRAGFKTGTAPQVGAIICWTDGGYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGAVSY
IYPK

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=769485 F6I26_RS00285 WP_070241460.1 43299..45233(-) (lytF) [Streptococcus anginosus strain UMB4708]
ATGAAGAAATACAGTCAATTATTTTTACTATCTAACACTATTTTGGGCGTTTTTTCTGCTCAACTAACTGCTCAAGCCTC
GGAAGCAGATAATGCTCAAAAAAGCTCAAATCCAGCAATTCTTGCTAGCAACATTACCGTCAATGTTTCTGGAAATACAG
CTTCTATTAACTACACACGCTCACAGACACAAGTTCCTTACACCATTTACCACGCTGTTTGGTCTGATGAAAATGGGCAA
GACGATATCAAATGGTATTCTGCGCCTCAGACACCCACTACAGCTATTGATTTGCGTCAGCACACTGGTTATGGAACCTT
TCATGTTCACACTTATATCAATATCAATGGAAAAATGGTTGGTTTAAACGGAACGACTTTCAAAGTAGAAAAACCAGCTA
GCGGCACGGTTTCTACAACCGTTTTAGGAAAGACTGCTCAAATATCCTTTACTCGAAACAAAGATCAAACAAATGCCAAT
ATTTTACACGCTGTTTGCTCTGACGAAAAAGGACAAGATGACATCAAGTGGTATACGGCAGGGCAAGACACAACAGAAAT
TGACTTATCCAATCATAAAGGATACGGTGTTTACCATGTTCATACTTATGAAAGTAAAAACGGAAAGATGATTGGATTAA
ATGACACCACTTTTAACCTTGAAAAACCAAATCCTTCTATCCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAG
ATCAAAAATGTTCCTAAAACAATCTACAAACTAACGGTTCCGGCTTGGTCTGACCGCAACGGACAGGATGATCTTCAATG
GTATGCAGCTACTAAAAATTCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACATAGGAACTT
ATCATATTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATCACTGCCCAAGTTGATGCT
GATAAATTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATCAAGAACAAGGGACTTATACCGT
CAAAGTTAGTGAAACTTCAAAGTCCAAGCCGATTCAATCCGTCCGAGTACCTATTTGGAGCACGAGCAATCAAAGCAATA
TCAAGTGGTATGCAGCCACTAATCACGGTGATGGAACCTTTACGACAAGCTTTGATATTCGCAATCATCAAGTTTTTTCC
GGAACATACACCAATCATATTTATGTGAAATATAAAGACGGTAGCGAGCATAGTTATGCAACGGATTCGGTTGCTATGTC
CGCAGAAAAAATTAAAACCAAAGTATCTGTCGCTAAACGCTCAACTTATCTTTATGAGGTGACGGTGACAGATGCTTACG
GCGATGGCAAGATTAGCCTACCGACTTGGTCTGAAGTCAACGGCCAAGATGATATTCAGTGGTACACCGCTACTAAAGCT
GGAAATGGAATTTACAAATTCACAGTTGATACGCAAAAACACACTGGCAGTGGCCTTTTCCATACACATGTTTACCGCAA
TCTCAACGGTCAAATAATTGGACTAACAGGTACGAGATATCAAGTAGAGAAGCCTGCTATCTCTTTCCAACCAAATTATG
CCGCAGCAACGACTTATCCAAAAGGGCAATGCACTTGGGGCGCCAAAGCTCTTGCACCTTGGGCTGGCAATTACTGGGGC
AATGGTGGTGATTGGGCTGCTAGCGCCAGACGAGCTGGTTTTAAAACCGGTACAGCTCCACAAGTAGGGGCTATTATTTG
TTGGACAGACGGTGGTTACGGTCACGTTGGAGTTGTTACTCACGTTGCCTCAAACACACGCATTCAGATTCAAGAGGCCA
ACTACGCTGGAAAACAGTATATTGGCAACTTCCGCGGCTGGTTCAATCCTCATGCAGCTGGACAAGGAGCAGTTAGTTAC
ATTTATCCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A412PM75

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.402

81.056

0.368

  lytF Streptococcus gordonii str. Challis substr. CH1

44.444

81.056

0.36