Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA21_RS07845 Genome accession   NZ_CP126955
Coordinates   1573930..1574559 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O78:H4 strain APEC E123     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568930..1579559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA21_RS07825 (QQA21_07825) ycbZ 1569319..1571079 (-) 1761 WP_000156526.1 Lon protease family protein -
  QQA21_RS07830 (QQA21_07830) matP 1571265..1571717 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQA21_RS07835 (QQA21_07835) ompA 1571793..1572845 (-) 1053 WP_001361736.1 porin OmpA -
  QQA21_RS07840 (QQA21_07840) sulA 1573202..1573711 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQA21_RS07845 (QQA21_07845) sxy/tfoX 1573930..1574559 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA21_RS07850 (QQA21_07850) yccS 1574522..1576684 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QQA21_RS07855 (QQA21_07855) yccF 1576694..1577140 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QQA21_RS07860 (QQA21_07860) helD 1577263..1579317 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=769423 QQA21_RS07845 WP_000839153.1 1573930..1574559(+) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E123]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769423 QQA21_RS07845 WP_000839153.1 1573930..1574559(+) (sxy/tfoX) [Escherichia coli O78:H4 strain APEC E123]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1