Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQA24_RS07795 Genome accession   NZ_CP126946
Coordinates   1612849..1613478 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O78:H51 strain APEC E18005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607849..1618478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA24_RS07775 (QQA24_07775) ycbZ 1608239..1609999 (-) 1761 WP_000156526.1 Lon protease family protein -
  QQA24_RS07780 (QQA24_07780) matP 1610185..1610637 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QQA24_RS07785 (QQA24_07785) ompA 1610712..1611764 (-) 1053 WP_000750419.1 porin OmpA -
  QQA24_RS07790 (QQA24_07790) sulA 1612121..1612630 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQA24_RS07795 (QQA24_07795) sxy/tfoX 1612849..1613478 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQA24_RS07800 (QQA24_07800) yccS 1613441..1615603 (-) 2163 WP_000875044.1 YccS family putative transporter -
  QQA24_RS07805 (QQA24_07805) yccF 1615613..1616059 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QQA24_RS07810 (QQA24_07810) helD 1616182..1618236 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=769173 QQA24_RS07795 WP_000839153.1 1612849..1613478(+) (sxy/tfoX) [Escherichia coli O78:H51 strain APEC E18005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=769173 QQA24_RS07795 WP_000839153.1 1612849..1613478(+) (sxy/tfoX) [Escherichia coli O78:H51 strain APEC E18005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1