Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PCP84_RS08080 Genome accession   NZ_CP115193
Coordinates   1704341..1705678 (+) Length   445 a.a.
NCBI ID   WP_174216325.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F077     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699341..1710678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP84_RS08055 (PCP84_08050) pgeF 1699484..1700212 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  PCP84_RS08060 (PCP84_08055) rluD 1700209..1701171 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCP84_RS08065 (PCP84_08060) - 1701317..1702342 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PCP84_RS08070 (PCP84_08065) - 1702499..1702744 (+) 246 WP_003102591.1 PP0621 family protein -
  PCP84_RS08075 (PCP84_08070) pilS 1702734..1704326 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  PCP84_RS08080 (PCP84_08075) pilR 1704341..1705678 (+) 1338 WP_174216325.1 two-component system response regulator PilR Regulator
  PCP84_RS08085 (PCP84_08080) thiO 1705724..1706818 (-) 1095 WP_003145981.1 glycine oxidase ThiO -
  PCP84_RS08090 (PCP84_08085) - 1706953..1707462 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PCP84_RS08095 (PCP84_08090) - 1707568..1708074 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP84_RS08100 (PCP84_08095) pilV 1708065..1708622 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP84_RS08105 (PCP84_08100) pilW 1708619..1709443 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP84_RS08110 (PCP84_08105) pilX 1709440..1710027 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49765.11 Da        Isoelectric Point: 5.8654

>NTDB_id=768916 PCP84_RS08080 WP_174216325.1 1704341..1705678(+) (pilR) [Pseudomonas aeruginosa strain F077]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEVPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=768916 PCP84_RS08080 WP_174216325.1 1704341..1705678(+) (pilR) [Pseudomonas aeruginosa strain F077]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGTGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAAAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.117

100

0.382