Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QPL68_RS05530 Genome accession   NZ_CP126629
Coordinates   1134342..1135424 (-) Length   360 a.a.
NCBI ID   WP_063650536.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1129342..1140424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS05510 (QPL68_05510) - 1129957..1130055 (-) 99 WP_001791369.1 hypothetical protein -
  QPL68_RS05515 (QPL68_05515) secA 1130097..1132628 (-) 2532 WP_063650534.1 preprotein translocase subunit SecA -
  QPL68_RS05520 (QPL68_05520) raiA 1133042..1133614 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  QPL68_RS05525 (QPL68_05525) - 1133675..1134349 (-) 675 WP_063650535.1 ComF family protein -
  QPL68_RS05530 (QPL68_05530) comFA 1134342..1135424 (-) 1083 WP_063650536.1 DEAD/DEAH box helicase Machinery gene
  QPL68_RS05535 (QPL68_05535) fakB1 1135788..1136654 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  QPL68_RS05540 (QPL68_05540) - 1136798..1137439 (+) 642 WP_063650538.1 YigZ family protein -
  QPL68_RS05545 (QPL68_05545) - 1137611..1138666 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  QPL68_RS05550 (QPL68_05550) - 1138984..1140054 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42142.84 Da        Isoelectric Point: 9.8307

>NTDB_id=767925 QPL68_RS05530 WP_063650536.1 1134342..1135424(-) (comFA) [Staphylococcus aureus strain 35-42]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKRHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFITTILERLFTMVNLDVVVIDAHLYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSFNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=767925 QPL68_RS05530 WP_063650536.1 1134342..1135424(-) (comFA) [Staphylococcus aureus strain 35-42]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGACATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACGGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTATTACAACAATATTAGAACGTTTATTTACAATGGTAAATT
TGGATGTTGTTGTTATCGATGCACATCTATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTTTCAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.348

94.167

0.361