Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F0313_RS05745 Genome accession   NZ_CP126600
Coordinates   1158789..1159418 (-) Length   209 a.a.
NCBI ID   WP_032296620.1    Uniprot ID   -
Organism   Escherichia coli strain Ec1119     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1153789..1164418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0313_RS05730 (F0313_005720) helD 1154031..1156085 (-) 2055 WP_149488403.1 DNA helicase IV -
  F0313_RS05735 (F0313_005725) yccF 1156208..1156654 (+) 447 WP_001261235.1 YccF domain-containing protein -
  F0313_RS05740 (F0313_005730) yccS 1156664..1158826 (+) 2163 WP_149488401.1 YccS family putative transporter -
  F0313_RS05745 (F0313_005735) sxy/tfoX 1158789..1159418 (-) 630 WP_032296620.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F0313_RS05750 (F0313_005740) sulA 1159637..1160146 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F0313_RS05755 (F0313_005745) ompA 1160503..1161543 (+) 1041 WP_000750416.1 porin OmpA -
  F0313_RS05760 (F0313_005750) matP 1161619..1162071 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F0313_RS05765 (F0313_005755) ycbZ 1162257..1164017 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24127.97 Da        Isoelectric Point: 8.9891

>NTDB_id=767644 F0313_RS05745 WP_032296620.1 1158789..1159418(-) (sxy/tfoX) [Escherichia coli strain Ec1119]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVAHRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767644 F0313_RS05745 WP_032296620.1 1158789..1159418(-) (sxy/tfoX) [Escherichia coli strain Ec1119]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACA
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995