Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QPK28_RS06200 Genome accession   NZ_CP126576
Coordinates   1243681..1244598 (+) Length   305 a.a.
NCBI ID   WP_023856653.1    Uniprot ID   A0ABY3FW20
Organism   Bacillus licheniformis strain CQMB003     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238681..1249598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS06185 trpS 1239292..1240284 (-) 993 WP_080618610.1 tryptophan--tRNA ligase -
  QPK28_RS06190 - 1241020..1242645 (+) 1626 WP_020450931.1 peptide ABC transporter substrate-binding protein -
  QPK28_RS06195 - 1242741..1243676 (+) 936 WP_020450932.1 ABC transporter permease -
  QPK28_RS06200 amiD 1243681..1244598 (+) 918 WP_023856653.1 ABC transporter permease Regulator
  QPK28_RS06205 - 1244603..1245679 (+) 1077 WP_152342713.1 ABC transporter ATP-binding protein -
  QPK28_RS06210 - 1245681..1246604 (+) 924 WP_025808307.1 ATP-binding cassette domain-containing protein -
  QPK28_RS06215 - 1246834..1247412 (+) 579 WP_003180619.1 GNAT family N-acetyltransferase -
  QPK28_RS06220 spxA 1247590..1247985 (+) 396 WP_003180621.1 transcriptional regulator SpxA -
  QPK28_RS06225 - 1248208..1248870 (-) 663 WP_009328832.1 TerC family protein -
  QPK28_RS06230 - 1249046..1249174 (+) 129 Protein_1174 hypothetical protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33924.23 Da        Isoelectric Point: 8.8249

>NTDB_id=767445 QPK28_RS06200 WP_023856653.1 1243681..1244598(+) (amiD) [Bacillus licheniformis strain CQMB003]
MQQIPKDMFEPAAVDHSEAEKISKKNLSFWTDVFLRFKENKLALFGLVVLILIALMAIFAPVFSSFQYEETDLTNANQPP
SGEHWFGTDDLGRDVFVRTWVGARISLTIGLAAALIDVLIGVIWGAISGIRGGRTDEIMMRIADVLWAIPSLLMTILLLV
VMGKGLVTMIVAMVITGWINMARIVRGQVLQLKNQEFVLASRTLGAKNSRIIRKHLLPNIMSPILVTMTLTVPTAIFYEA
FLSYLGLGVPQPLASWGTMATDGVQGLEYYPWRLFFPATFICLTMFAFNVIGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=767445 QPK28_RS06200 WP_023856653.1 1243681..1244598(+) (amiD) [Bacillus licheniformis strain CQMB003]
ATGCAGCAAATACCAAAAGACATGTTTGAACCTGCAGCTGTTGACCATAGCGAAGCCGAAAAGATCTCAAAGAAAAACCT
TTCATTTTGGACAGACGTATTCTTGAGATTTAAAGAAAACAAGCTGGCGCTGTTTGGACTGGTGGTTCTGATCCTGATCG
CTCTGATGGCTATCTTCGCGCCGGTATTCTCAAGCTTTCAATATGAAGAAACGGATTTAACGAATGCGAACCAGCCGCCG
AGCGGCGAGCACTGGTTTGGAACAGATGACCTTGGAAGGGACGTATTCGTCCGTACATGGGTCGGCGCACGCATCTCGCT
GACAATCGGACTGGCTGCCGCGCTGATCGACGTTTTGATCGGTGTGATATGGGGTGCGATATCAGGCATCAGAGGCGGAC
GTACTGACGAAATTATGATGAGAATTGCAGATGTTTTATGGGCGATTCCTTCCTTATTAATGACGATCCTGCTGCTCGTA
GTGATGGGAAAAGGCTTGGTCACGATGATCGTCGCGATGGTTATTACGGGATGGATCAACATGGCGAGAATCGTCCGTGG
ACAAGTACTCCAGCTCAAAAATCAGGAGTTTGTGCTCGCCTCAAGAACTTTGGGAGCGAAAAACTCGCGCATCATCAGAA
AGCACTTGCTGCCCAACATCATGAGCCCGATCTTGGTCACCATGACATTAACCGTGCCTACGGCTATTTTCTATGAAGCG
TTTTTAAGCTACCTCGGCCTCGGGGTTCCGCAGCCGCTTGCAAGCTGGGGAACGATGGCTACAGACGGTGTGCAGGGATT
GGAATATTACCCATGGCGCCTGTTCTTCCCGGCTACTTTTATCTGTCTGACCATGTTTGCATTCAACGTTATCGGCGACG
GACTGCGCGACGCTTTAGATCCGAAGCTGCGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-80)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

35.599

100

0.361