Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QNK06_RS02390 Genome accession   NZ_CP126097
Coordinates   466739..467173 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain KF24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461739..472173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS02360 (QNK06_02360) ydaD 462388..463248 (+) 861 WP_015252798.1 SDR family oxidoreductase -
  QNK06_RS02365 (QNK06_02365) lyxE 463264..463767 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QNK06_RS02370 (QNK06_02370) ydaF 463853..464404 (+) 552 WP_003234398.1 GNAT family protein -
  QNK06_RS02375 (QNK06_02375) ydaG 464482..464904 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  QNK06_RS02380 (QNK06_02380) amj 465410..466219 (+) 810 WP_283934065.1 lipid II flippase Amj -
  QNK06_RS02385 (QNK06_02385) ydzA 466264..466554 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  QNK06_RS02390 (QNK06_02390) lrpC 466739..467173 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QNK06_RS02395 (QNK06_02395) topB 467238..469421 (+) 2184 WP_041850711.1 DNA topoisomerase III -
  QNK06_RS02400 (QNK06_02400) epsJ 469624..470712 (+) 1089 WP_029317314.1 hypothetical protein -
  QNK06_RS02405 (QNK06_02405) epsK 470693..471544 (+) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=766913 QNK06_RS02390 WP_003246585.1 466739..467173(+) (lrpC) [Bacillus subtilis strain KF24]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=766913 QNK06_RS02390 WP_003246585.1 466739..467173(+) (lrpC) [Bacillus subtilis strain KF24]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1