Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O4000_RS15320 Genome accession   NZ_CP114564
Coordinates   3095525..3096139 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 2953647     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090525..3101139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4000_RS15305 (O4000_15305) helD 3090749..3092803 (-) 2055 WP_054528243.1 DNA helicase IV -
  O4000_RS15310 (O4000_15310) - 3092929..3093375 (+) 447 WP_003035892.1 YccF domain-containing protein -
  O4000_RS15315 (O4000_15315) yccS 3093394..3095547 (+) 2154 WP_054528680.1 YccS family putative transporter -
  O4000_RS15320 (O4000_15320) sxy/tfoX 3095525..3096139 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  O4000_RS15325 (O4000_15325) sulA 3096357..3096866 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  O4000_RS15330 (O4000_15330) ompA 3097224..3098270 (+) 1047 WP_003035883.1 porin OmpA -
  O4000_RS15335 (O4000_15335) matP 3098359..3098811 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  O4000_RS15340 (O4000_15340) - 3098997..3100757 (+) 1761 WP_054528242.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=766411 O4000_RS15320 WP_003035889.1 3095525..3096139(-) (sxy/tfoX) [Citrobacter freundii strain 2953647]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=766411 O4000_RS15320 WP_003035889.1 3095525..3096139(-) (sxy/tfoX) [Citrobacter freundii strain 2953647]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686