Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QM970_RS02415 Genome accession   NZ_CP125980
Coordinates   475245..475679 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain ZKY03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470245..480679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS02385 (QM970_02400) ydaD 470892..471752 (+) 861 WP_264379423.1 SDR family oxidoreductase -
  QM970_RS02390 (QM970_02405) lyxE 471768..472271 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  QM970_RS02395 (QM970_02410) ydaF 472360..472911 (+) 552 WP_264379424.1 GNAT family N-acetyltransferase -
  QM970_RS02400 (QM970_02415) ydaG 472989..473411 (+) 423 WP_095843480.1 pyridoxamine 5'-phosphate oxidase family protein -
  QM970_RS02405 (QM970_02420) amj 473916..474725 (+) 810 WP_103330340.1 lipid II flippase Amj -
  QM970_RS02410 (QM970_02425) ydzA 474770..475060 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  QM970_RS02415 (QM970_02430) lrpC 475245..475679 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QM970_RS02420 (QM970_02435) topB 475744..477927 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  QM970_RS02425 (QM970_02440) mutT 478040..478489 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  QM970_RS02430 (QM970_02445) poxB 478556..480139 (+) 1584 WP_264379425.1 thiamine pyrophosphate-dependent enzyme -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=765491 QM970_RS02415 WP_003246585.1 475245..475679(+) (lrpC) [Bacillus subtilis strain ZKY03]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=765491 QM970_RS02415 WP_003246585.1 475245..475679(+) (lrpC) [Bacillus subtilis strain ZKY03]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1