Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O2S85_RS18570 Genome accession   NZ_CP114176
Coordinates   3734705..3735178 (-) Length   157 a.a.
NCBI ID   WP_269410761.1    Uniprot ID   -
Organism   Lentibacillus daqui strain ZS110521     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3729705..3740178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2S85_RS18545 rplI 3729784..3730230 (-) 447 WP_269410757.1 50S ribosomal protein L9 -
  O2S85_RS18550 - 3730227..3732200 (-) 1974 WP_269410758.1 DHH family phosphoesterase -
  O2S85_RS18555 - 3732503..3733441 (-) 939 WP_269410759.1 YybS family protein -
  O2S85_RS18560 - 3733660..3734160 (+) 501 WP_269410760.1 DUF1189 family protein -
  O2S85_RS18565 rpsR 3734276..3734506 (-) 231 WP_170840739.1 30S ribosomal protein S18 -
  O2S85_RS18570 ssbA 3734705..3735178 (-) 474 WP_269410761.1 single-stranded DNA-binding protein Machinery gene
  O2S85_RS18575 rpsF 3735194..3735484 (-) 291 WP_269410762.1 30S ribosomal protein S6 -
  O2S85_RS18580 ychF 3735721..3736821 (-) 1101 WP_269410763.1 redox-regulated ATPase YchF -
  O2S85_RS18585 - 3737093..3737290 (-) 198 WP_269410764.1 DUF951 domain-containing protein -
  O2S85_RS18590 - 3737318..3738253 (-) 936 WP_269410765.1 mechanosensitive ion channel family protein -
  O2S85_RS18595 - 3738361..3739386 (-) 1026 WP_269410766.1 hypothetical protein -
  O2S85_RS18600 yyaC 3739477..3740151 (+) 675 WP_269410767.1 spore protease YyaC -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17523.31 Da        Isoelectric Point: 4.9225

>NTDB_id=764682 O2S85_RS18570 WP_269410761.1 3734705..3735178(-) (ssbA) [Lentibacillus daqui strain ZS110521]
MLNRVVLVGRLTKDPDLRYTATGVAVANFTIAVNRPFSNQQGEREADFINCVVWRRAAENLANYMKKGNMIGVDGRVQTR
RYEGQDGKTVFVTEIVAESVQFLETKSSSQRSQGSSGFQPQQSPNQNQNQNQNQPNPENPFGNNGEPIDISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=764682 O2S85_RS18570 WP_269410761.1 3734705..3735178(-) (ssbA) [Lentibacillus daqui strain ZS110521]
ATGTTAAATCGTGTCGTACTAGTTGGCAGATTAACGAAGGATCCAGATTTACGTTATACAGCAACCGGAGTCGCGGTGGC
CAACTTTACCATTGCGGTTAACCGGCCTTTTTCCAACCAGCAAGGTGAACGTGAAGCAGATTTTATTAATTGTGTCGTTT
GGCGCAGAGCTGCGGAAAACCTGGCAAACTACATGAAAAAAGGTAACATGATCGGCGTTGATGGTCGGGTTCAGACACGC
AGATATGAAGGACAGGATGGAAAGACCGTTTTTGTAACAGAAATTGTCGCCGAAAGTGTGCAATTTTTGGAAACAAAAAG
TTCTTCACAAAGAAGTCAAGGATCCTCTGGTTTTCAGCCACAACAAAGTCCGAATCAAAACCAAAACCAGAATCAGAACC
AGCCAAATCCTGAGAACCCATTTGGAAATAATGGCGAACCTATCGATATATCCGACGATGATTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.516

0.395
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.363