Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QMY17_RS15895 Genome accession   NZ_CP125812
Coordinates   2939436..2940353 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain N3378-3At     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934436..2945353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS15870 spx 2934793..2935188 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  QMY17_RS15875 yjbC 2935369..2935947 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  QMY17_RS15880 yjbB 2936111..2937328 (-) 1218 WP_072592593.1 MFS transporter -
  QMY17_RS15885 oppF 2937436..2938353 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  QMY17_RS15890 oppD 2938355..2939431 (-) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  QMY17_RS15895 amiD 2939436..2940353 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  QMY17_RS15900 oppB 2940357..2941292 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  QMY17_RS15905 oppA 2941400..2943037 (-) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  QMY17_RS15910 trpS 2943781..2944773 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=764181 QMY17_RS15895 WP_003232954.1 2939436..2940353(-) (amiD) [Bacillus subtilis strain N3378-3At]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=764181 QMY17_RS15895 WP_003232954.1 2939436..2940353(-) (amiD) [Bacillus subtilis strain N3378-3At]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364