Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OYT09_RS14690 Genome accession   NZ_CP113973
Coordinates   3283024..3283404 (-) Length   126 a.a.
NCBI ID   WP_420793141.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain P3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3278024..3288404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT09_RS14670 (OYT09_14685) leuC 3278612..3280036 (-) 1425 WP_013310634.1 3-isopropylmalate dehydratase large subunit -
  OYT09_RS14675 (OYT09_14690) - 3280435..3280542 (-) 108 WP_272640905.1 YjcZ family sporulation protein -
  OYT09_RS14680 (OYT09_14695) - 3280676..3281809 (-) 1134 WP_272638252.1 fibronectin type III domain-containing protein -
  OYT09_RS14685 (OYT09_14700) - 3282051..3282854 (-) 804 WP_103049097.1 discoidin domain-containing protein -
  OYT09_RS14690 (OYT09_14705) nucA/comI 3283024..3283404 (-) 381 WP_420793141.1 sporulation protein Machinery gene
  OYT09_RS14695 (OYT09_14710) - 3283583..3284218 (-) 636 WP_272638253.1 hypothetical protein -
  OYT09_RS14700 (OYT09_14715) - 3284275..3284841 (-) 567 WP_075154293.1 hypothetical protein -
  OYT09_RS14705 (OYT09_14720) - 3285063..3285296 (-) 234 WP_103049255.1 hypothetical protein -
  OYT09_RS14710 (OYT09_14725) - 3285464..3285571 (-) 108 WP_272638254.1 YjcZ family sporulation protein -
  OYT09_RS14715 (OYT09_14730) - 3285748..3286479 (-) 732 WP_272638255.1 hypothetical protein -
  OYT09_RS14720 (OYT09_14735) - 3286645..3288339 (-) 1695 WP_272638257.1 DNA/RNA helicase domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13880.41 Da        Isoelectric Point: 5.6146

>NTDB_id=763886 OYT09_RS14690 WP_420793141.1 3283024..3283404(-) (nucA/comI) [Paenibacillus polymyxa strain P3]
MHFSVQGVYAEPAVISQQAAGYTLEFPSSRYPETGAHIRDAIEAGHSAVCTIDRDEAEENRKESLKGYPTKKGYDRDEWP
MAICAEGGAGADIRYITPSDNRGAGSWVSHQLDKYADGIKVRFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=763886 OYT09_RS14690 WP_420793141.1 3283024..3283404(-) (nucA/comI) [Paenibacillus polymyxa strain P3]
ATCCATTTTTCCGTTCAGGGCGTTTACGCTGAACCGGCGGTAATCAGCCAACAAGCAGCTGGGTATACGTTGGAGTTCCC
AAGTTCACGTTACCCTGAAACCGGAGCACACATTAGGGATGCCATTGAAGCCGGACATTCTGCTGTATGTACAATTGATC
GGGATGAAGCTGAGGAAAACAGGAAGGAGTCTCTAAAGGGCTATCCGACTAAAAAAGGATATGACCGCGATGAATGGCCA
ATGGCAATTTGTGCTGAAGGCGGTGCAGGTGCAGATATCCGATACATAACCCCTAGTGATAACCGGGGAGCAGGATCATG
GGTAAGTCATCAGTTAGATAAGTATGCTGATGGAATAAAGGTAAGATTTATAGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.308

82.54

0.556