Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLQ05_RS08710 Genome accession   NZ_CP125762
Coordinates   1645647..1646057 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain KRS015     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1640647..1651057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS08675 arsR 1640810..1641127 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  QLQ05_RS08680 yqcK 1641188..1641628 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  QLQ05_RS08685 acr3 1641651..1642691 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  QLQ05_RS08690 arsC 1642703..1643122 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  QLQ05_RS08695 - 1643477..1643655 (+) 179 Protein_1698 hypothetical protein -
  QLQ05_RS08700 spoIVCA 1643613..1645073 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  QLQ05_RS08705 - 1645104..1645451 (-) 348 Protein_1700 sigma-70 family RNA polymerase sigma factor -
  QLQ05_RS08710 nucA/comI 1645647..1646057 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  QLQ05_RS08715 yqeB 1646090..1646812 (-) 723 WP_010886572.1 hypothetical protein -
  QLQ05_RS08720 gnd 1647064..1647957 (+) 894 WP_003229961.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QLQ05_RS08725 yqeD 1647976..1648602 (-) 627 WP_003229962.1 TVP38/TMEM64 family protein -
  QLQ05_RS08730 cwlH 1648789..1649541 (+) 753 WP_003229963.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  QLQ05_RS08735 yqeF 1649793..1650524 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  QLQ05_RS08740 - 1650830..1650970 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=763868 QLQ05_RS08710 WP_009967785.1 1645647..1646057(+) (nucA/comI) [Bacillus subtilis strain KRS015]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=763868 QLQ05_RS08710 WP_009967785.1 1645647..1646057(+) (nucA/comI) [Bacillus subtilis strain KRS015]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529