Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OPT60_RS09530 Genome accession   NZ_CP125359
Coordinates   1939532..1941241 (-) Length   569 a.a.
NCBI ID   WP_003053361.1    Uniprot ID   A0ABU0A4B9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934532..1946241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS09510 (OPT60_09510) radA 1934863..1936224 (-) 1362 WP_065355332.1 DNA repair protein RadA Machinery gene
  OPT60_RS09515 (OPT60_09515) - 1936307..1936753 (-) 447 WP_003053378.1 dUTP diphosphatase -
  OPT60_RS09520 (OPT60_09520) - 1936861..1937628 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  OPT60_RS09525 (OPT60_09525) - 1937748..1939532 (-) 1785 WP_084916675.1 ABC transporter ATP-binding protein -
  OPT60_RS09530 (OPT60_09530) rcrP 1939532..1941241 (-) 1710 WP_003053361.1 ABC transporter ATP-binding protein Regulator
  OPT60_RS09535 (OPT60_09535) rcrR 1941234..1941683 (-) 450 WP_003053369.1 MarR family transcriptional regulator Regulator
  OPT60_RS09540 (OPT60_09540) - 1941884..1942900 (+) 1017 WP_084916674.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  OPT60_RS09545 (OPT60_09545) hasC 1942932..1943834 (+) 903 WP_003061497.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  OPT60_RS09550 (OPT60_09550) - 1944025..1944639 (+) 615 WP_084916672.1 DUF6198 family protein -
  OPT60_RS09555 (OPT60_09555) - 1944816..1945490 (-) 675 WP_065358751.1 rhomboid family intramembrane serine protease -
  OPT60_RS09560 (OPT60_09560) - 1945487..1946014 (-) 528 WP_165737347.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63345.98 Da        Isoelectric Point: 5.6522

>NTDB_id=762439 OPT60_RS09530 WP_003053361.1 1939532..1941241(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MLKEAILRYKWYALGSLIMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYNVGILLLIIALMGLIAGAVNTILAAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDINQIQNLVMMLFQVLFRLPILFIGAFIMAVQTLPDLWWVIVLMV
ILIGLIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNLFIGYGFSLMQPAL
MLVSYLAVYVSIYMVSGMVETDPTVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRLKEVLDTESTMTFDTEQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFRIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPIKSLSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDYAMERAARIAQAKEFIDRMDDRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSERLVQEALNKELKETTTVIIAQKISSVVKADKILVLDQGQLIGEGTHAELVANNAIYREIY
ETQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=762439 OPT60_RS09530 WP_003053361.1 1939532..1941241(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGCTTAAAGAAGCGATTTTGCGTTACAAATGGTACGCATTGGGCTCGCTCATCATGATTATTGGGGTGGTAGCGAGCAG
TTTGCTTCAGCCTCATTATTTAAAAGATGTGCTGAGTGCTGTTATTCAAAATAACCAAGATAAGATTTACAATGTGGGGA
TATTGTTGCTTATCATTGCGCTGATGGGATTGATTGCAGGGGCAGTTAATACTATTTTAGCTGCTAAGATTGCTCAAGGG
GTCTCAGCGGATATTCGTGAGAAGACCTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTAGAAGCTTTCAATGCTGG
GAACCTCGTGGTTCGGATGACCAATGATATTAATCAAATTCAAAATTTGGTAATGATGCTGTTTCAAGTGCTTTTTCGTC
TGCCGATTCTCTTTATTGGAGCTTTTATCATGGCGGTGCAGACCCTACCTGACTTGTGGTGGGTGATTGTGCTGATGGTT
ATTTTAATTGGTCTTATCATGGCTTTGGTCATGAGTCAGATGGGCCCACGTTTTGGGAAATTCCAAAAGTTGATGGACAA
GATCAATCGAATTGCTAAGGAAAATCTTCGTGGCGTGCGTGTGGTTAAATCTTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAACGTCCAATGAACTATTAGATTTGAATCTCTTTATCGGCTACGGTTTTTCGTTGATGCAACCTGCTTTG
ATGTTGGTATCTTATCTGGCAGTGTACGTGTCCATCTATATGGTTTCAGGCATGGTTGAAACAGATCCTACCGTTATTGG
GAATATTGCTTCTTTCATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTTGGCTTTATGGGCATGCAAGCAA
GTCGTGCCTTTGTCTCTATTGGTCGTCTCAAAGAGGTGCTAGATACTGAGTCAACCATGACCTTTGACACCGAGCAAGAA
GAAGAGGTTTCAGGTAGTATTGTCTTTGAGGATGTCAGCTTTACTTATCCTAATGATGATGAGCCGACCTTACGCCATAT
TTCCTTTAGGATTGAACCTGGTCAAATGGTTGGTGTTGTCGGTGCTACTGGTGCTGGGAAGTCTACACTGGCACAGCTTA
TTCCGCGCTTGTTTGACCCGCAAGAAGGTCAAATCTTGCTGGGAGGCAAACCGATTAAATCCTTGAGCCAAGCGACTCTT
CGTCAAACGGTTTCTATCGTGTTGCAAAAGGCTATTCTTTTTTCGGGAACCATTGCAGACAATCTCCGTCAAGGATCAGC
AACTGCAGATGATTATGCCATGGAACGAGCAGCGCGTATTGCTCAAGCCAAAGAATTTATCGATCGTATGGATGACCGCT
ATGAAAGCCAAGTGGAAGAACGGGGCAATAACTTCTCTGGTGGTCAAAAACAACGGATGTCGATTGCGCGTGGTGTCATT
AACCAACCTAAGATTCTTGTATTGGATGACTCAACCTCGGCTCTGGATGCCAAGTCAGAAAGATTAGTTCAAGAAGCCTT
GAATAAAGAGTTGAAAGAGACCACCACAGTGATCATTGCCCAAAAAATTTCGTCAGTGGTAAAGGCTGATAAGATTTTAG
TTCTCGATCAGGGCCAACTGATTGGCGAAGGAACTCATGCTGAGTTGGTAGCTAATAATGCGATTTATCGTGAAATTTAT
GAGACCCAAAAAGGGAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-282)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

34.915

100

0.362